miRNA display CGI


Results 1 - 20 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25545 5' -65.2 NC_005337.1 + 97734 0.66 0.489218
Target:  5'- cGGCGCcgCCCaGCcGCCGgGgaCGcCCGCGg -3'
miRNA:   3'- -UCGCGa-GGG-CGuCGGCgC--GCaGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 28941 0.66 0.489218
Target:  5'- gGGC-CUCCCGCcGCCGCaCGUgCUGgGc -3'
miRNA:   3'- -UCGcGAGGGCGuCGGCGcGCA-GGCgC- -5'
25545 5' -65.2 NC_005337.1 + 113091 0.66 0.489218
Target:  5'- cGCGgaCCUGCG--CGCGCagGUCCGCGc -3'
miRNA:   3'- uCGCgaGGGCGUcgGCGCG--CAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 9706 0.66 0.489218
Target:  5'- uAGCGCUUggaCGCGGCCuCGCG-CaGCGg -3'
miRNA:   3'- -UCGCGAGg--GCGUCGGcGCGCaGgCGC- -5'
25545 5' -65.2 NC_005337.1 + 19070 0.66 0.489218
Target:  5'- cAGCaGCgCCCGCAGCgGCaccGUGUCCa-- -3'
miRNA:   3'- -UCG-CGaGGGCGUCGgCG---CGCAGGcgc -5'
25545 5' -65.2 NC_005337.1 + 26056 0.66 0.489218
Target:  5'- gAGCGCggCUCGCAcGCCaccgcaauguaGCGCGg-CGCGg -3'
miRNA:   3'- -UCGCGa-GGGCGU-CGG-----------CGCGCagGCGC- -5'
25545 5' -65.2 NC_005337.1 + 2083 0.66 0.489218
Target:  5'- aGGCGCa--CGguGUCgGCGCGcgCCGCGa -3'
miRNA:   3'- -UCGCGaggGCguCGG-CGCGCa-GGCGC- -5'
25545 5' -65.2 NC_005337.1 + 27608 0.66 0.489218
Target:  5'- cAGCuccucCUCCCGCcGCuCGCGC-UCCGgGa -3'
miRNA:   3'- -UCGc----GAGGGCGuCG-GCGCGcAGGCgC- -5'
25545 5' -65.2 NC_005337.1 + 93746 0.66 0.489218
Target:  5'- cGCGCg-CCGCGGCgGCuGCaugCCGCa -3'
miRNA:   3'- uCGCGagGGCGUCGgCG-CGca-GGCGc -5'
25545 5' -65.2 NC_005337.1 + 63709 0.66 0.486505
Target:  5'- uGCGCUUgCGCGGacacagcaucucguUgGCGUaGUCCGCGg -3'
miRNA:   3'- uCGCGAGgGCGUC--------------GgCGCG-CAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 97671 0.66 0.480202
Target:  5'- cGCGCUCCa--GGCCGCggGCGUgcaCGUGg -3'
miRNA:   3'- uCGCGAGGgcgUCGGCG--CGCAg--GCGC- -5'
25545 5' -65.2 NC_005337.1 + 40524 0.66 0.480202
Target:  5'- aGGUGCggcaUGCAGCCGcCGCGgCgCGCGg -3'
miRNA:   3'- -UCGCGagg-GCGUCGGC-GCGCaG-GCGC- -5'
25545 5' -65.2 NC_005337.1 + 864 0.66 0.480202
Target:  5'- cAGCGCgggCGCGGCCGgGCGgaagagCGCGc -3'
miRNA:   3'- -UCGCGaggGCGUCGGCgCGCag----GCGC- -5'
25545 5' -65.2 NC_005337.1 + 864 0.66 0.480202
Target:  5'- cAGCGCgggCGCGGCCGgGCGgaagagCGCGc -3'
miRNA:   3'- -UCGCGaggGCGUCGGCgCGCag----GCGC- -5'
25545 5' -65.2 NC_005337.1 + 116306 0.66 0.480202
Target:  5'- --gGCUCCCGCcccuccauggAGCgGUGCGUgCUGCu -3'
miRNA:   3'- ucgCGAGGGCG----------UCGgCGCGCA-GGCGc -5'
25545 5' -65.2 NC_005337.1 + 68192 0.66 0.480202
Target:  5'- gAGCGCggcCCCGgGggcGCCGCuGCGggcCCGCc -3'
miRNA:   3'- -UCGCGa--GGGCgU---CGGCG-CGCa--GGCGc -5'
25545 5' -65.2 NC_005337.1 + 2211 0.66 0.480202
Target:  5'- gGGCGCggCCCG-GGCCGCGag-CgCGCGc -3'
miRNA:   3'- -UCGCGa-GGGCgUCGGCGCgcaG-GCGC- -5'
25545 5' -65.2 NC_005337.1 + 131270 0.66 0.471269
Target:  5'- cGCGCUgCCGgAGCC---CGUCCGCc -3'
miRNA:   3'- uCGCGAgGGCgUCGGcgcGCAGGCGc -5'
25545 5' -65.2 NC_005337.1 + 41513 0.66 0.471269
Target:  5'- gAGCGCaUCCgCGCGGCCauccgcuCGCGgaugucggUCGCGg -3'
miRNA:   3'- -UCGCG-AGG-GCGUCGGc------GCGCa-------GGCGC- -5'
25545 5' -65.2 NC_005337.1 + 64977 0.66 0.471269
Target:  5'- aGGCcuuCUCCCGCGcgaacugcccGUCGCGCG-CgGCGg -3'
miRNA:   3'- -UCGc--GAGGGCGU----------CGGCGCGCaGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.