miRNA display CGI


Results 21 - 40 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25545 5' -65.2 NC_005337.1 + 93793 0.66 0.471269
Target:  5'- cGCGCUacgaCGUGGUCGCGgcuccaguuuCGUCUGCGg -3'
miRNA:   3'- uCGCGAgg--GCGUCGGCGC----------GCAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 36499 0.66 0.471269
Target:  5'- aAGCGgUCCuucucgCGCAGCgCGCGCGUgaucUCGgGg -3'
miRNA:   3'- -UCGCgAGG------GCGUCG-GCGCGCA----GGCgC- -5'
25545 5' -65.2 NC_005337.1 + 29983 0.66 0.471269
Target:  5'- cGCGCcCUCGCGGaccgcCCGCGCGaacuccuugCUGCGg -3'
miRNA:   3'- uCGCGaGGGCGUC-----GGCGCGCa--------GGCGC- -5'
25545 5' -65.2 NC_005337.1 + 53001 0.66 0.471269
Target:  5'- cGUGCUCCUGUAGCgGCgGCaugaacCUGCGg -3'
miRNA:   3'- uCGCGAGGGCGUCGgCG-CGca----GGCGC- -5'
25545 5' -65.2 NC_005337.1 + 131270 0.66 0.471269
Target:  5'- cGCGCUgCCGgAGCC---CGUCCGCc -3'
miRNA:   3'- uCGCGAgGGCgUCGGcgcGCAGGCGc -5'
25545 5' -65.2 NC_005337.1 + 64977 0.66 0.471269
Target:  5'- aGGCcuuCUCCCGCGcgaacugcccGUCGCGCG-CgGCGg -3'
miRNA:   3'- -UCGc--GAGGGCGU----------CGGCGCGCaGgCGC- -5'
25545 5' -65.2 NC_005337.1 + 106027 0.66 0.471269
Target:  5'- cGUGCgCgUGguGCCGCGCGaCgGCGu -3'
miRNA:   3'- uCGCGaGgGCguCGGCGCGCaGgCGC- -5'
25545 5' -65.2 NC_005337.1 + 112397 0.66 0.471269
Target:  5'- gAGCGC-CgCGCAgGCCGUGCGguaggccuggaUCGCGg -3'
miRNA:   3'- -UCGCGaGgGCGU-CGGCGCGCa----------GGCGC- -5'
25545 5' -65.2 NC_005337.1 + 12315 0.66 0.47038
Target:  5'- cGCGUUCgcccggaaggaguCCGCGugguggugcagcGCCGUcCGUCCGCGg -3'
miRNA:   3'- uCGCGAG-------------GGCGU------------CGGCGcGCAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 105129 0.66 0.47038
Target:  5'- cGGCGCUCCgGaCGGCCGuCGCcgacaugGUgCUGCu -3'
miRNA:   3'- -UCGCGAGGgC-GUCGGC-GCG-------CA-GGCGc -5'
25545 5' -65.2 NC_005337.1 + 44460 0.66 0.465949
Target:  5'- gAGCGC-CUCGCcgAGCUggaggccaguucgagGCGCGgCCGCGu -3'
miRNA:   3'- -UCGCGaGGGCG--UCGG---------------CGCGCaGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 60446 0.66 0.46242
Target:  5'- cGCGCaugaCCGCcuCCGCGaCGUugCCGCGg -3'
miRNA:   3'- uCGCGag--GGCGucGGCGC-GCA--GGCGC- -5'
25545 5' -65.2 NC_005337.1 + 99248 0.66 0.46242
Target:  5'- cGCGCUCgCCGCGGaCgGCGa---CGCGg -3'
miRNA:   3'- uCGCGAG-GGCGUC-GgCGCgcagGCGC- -5'
25545 5' -65.2 NC_005337.1 + 5821 0.66 0.46242
Target:  5'- cGCGCcggUCCgGCGGUgugaaGUGCGgCCGCGa -3'
miRNA:   3'- uCGCG---AGGgCGUCGg----CGCGCaGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 78076 0.66 0.46242
Target:  5'- cGCGCUCCuUGCGGUagaGCuuGuUCCGCGc -3'
miRNA:   3'- uCGCGAGG-GCGUCGg--CGcgC-AGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 91733 0.66 0.46242
Target:  5'- uAGCGCacguagCCCcCGGCCacgcGCGCGUgCGCc -3'
miRNA:   3'- -UCGCGa-----GGGcGUCGG----CGCGCAgGCGc -5'
25545 5' -65.2 NC_005337.1 + 123455 0.66 0.46242
Target:  5'- uGCGCUagaCCCGC--CCGCGgCGUCCacgcaGCGg -3'
miRNA:   3'- uCGCGA---GGGCGucGGCGC-GCAGG-----CGC- -5'
25545 5' -65.2 NC_005337.1 + 34559 0.66 0.453659
Target:  5'- gAGCGUccugUCCGCgacgauGGCCGCGCGcagCGCGu -3'
miRNA:   3'- -UCGCGa---GGGCG------UCGGCGCGCag-GCGC- -5'
25545 5' -65.2 NC_005337.1 + 53601 0.66 0.453659
Target:  5'- uGCGCg--CGCGGaaGCGCG-CCGCGc -3'
miRNA:   3'- uCGCGaggGCGUCggCGCGCaGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 70542 0.66 0.453659
Target:  5'- -uCGCUgCCCGCGGacuaCGCcaacgagaugcuGUGUCCGCGc -3'
miRNA:   3'- ucGCGA-GGGCGUCg---GCG------------CGCAGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.