miRNA display CGI


Results 1 - 20 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25545 5' -65.2 NC_005337.1 + 532 0.71 0.223567
Target:  5'- aGGCGCUCCaGCuGCCgGCGCcacUCCGCc -3'
miRNA:   3'- -UCGCGAGGgCGuCGG-CGCGc--AGGCGc -5'
25545 5' -65.2 NC_005337.1 + 532 0.71 0.223567
Target:  5'- aGGCGCUCCaGCuGCCgGCGCcacUCCGCc -3'
miRNA:   3'- -UCGCGAGGgCGuCGG-CGCGc--AGGCGc -5'
25545 5' -65.2 NC_005337.1 + 568 0.79 0.062141
Target:  5'- cGCGCguaCgCCGCGGCCGCGCGgaagCCGCc -3'
miRNA:   3'- uCGCGa--G-GGCGUCGGCGCGCa---GGCGc -5'
25545 5' -65.2 NC_005337.1 + 568 0.79 0.062141
Target:  5'- cGCGCguaCgCCGCGGCCGCGCGgaagCCGCc -3'
miRNA:   3'- uCGCGa--G-GGCGUCGGCGCGCa---GGCGc -5'
25545 5' -65.2 NC_005337.1 + 711 0.8 0.059043
Target:  5'- cGCGCgcacgCCCGCGGCCGCGgGguaCGCGg -3'
miRNA:   3'- uCGCGa----GGGCGUCGGCGCgCag-GCGC- -5'
25545 5' -65.2 NC_005337.1 + 711 0.8 0.059043
Target:  5'- cGCGCgcacgCCCGCGGCCGCGgGguaCGCGg -3'
miRNA:   3'- uCGCGa----GGGCGUCGGCGCgCag-GCGC- -5'
25545 5' -65.2 NC_005337.1 + 747 0.67 0.402278
Target:  5'- gAGCGCggcgCCCGCggccucgacggcGGCCaugugcuGCGCG-CCGCc -3'
miRNA:   3'- -UCGCGa---GGGCG------------UCGG-------CGCGCaGGCGc -5'
25545 5' -65.2 NC_005337.1 + 747 0.67 0.402278
Target:  5'- gAGCGCggcgCCCGCggccucgacggcGGCCaugugcuGCGCG-CCGCc -3'
miRNA:   3'- -UCGCGa---GGGCG------------UCGG-------CGCGCaGGCGc -5'
25545 5' -65.2 NC_005337.1 + 864 0.66 0.480202
Target:  5'- cAGCGCgggCGCGGCCGgGCGgaagagCGCGc -3'
miRNA:   3'- -UCGCGaggGCGUCGGCgCGCag----GCGC- -5'
25545 5' -65.2 NC_005337.1 + 864 0.66 0.480202
Target:  5'- cAGCGCgggCGCGGCCGgGCGgaagagCGCGc -3'
miRNA:   3'- -UCGCGaggGCGUCGGCgCGCag----GCGC- -5'
25545 5' -65.2 NC_005337.1 + 1121 0.71 0.218434
Target:  5'- gGGaGCagCCGCAGCaCGCGCGcgaccagcUCCGCGg -3'
miRNA:   3'- -UCgCGagGGCGUCG-GCGCGC--------AGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 1121 0.71 0.218434
Target:  5'- gGGaGCagCCGCAGCaCGCGCGcgaccagcUCCGCGg -3'
miRNA:   3'- -UCgCGagGGCGUCG-GCGCGC--------AGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 1159 0.66 0.45018
Target:  5'- gAGCGCgccggcggagcggCCCGCuaGGCggUGCGCGagCGCGg -3'
miRNA:   3'- -UCGCGa------------GGGCG--UCG--GCGCGCagGCGC- -5'
25545 5' -65.2 NC_005337.1 + 1644 0.7 0.270825
Target:  5'- uGCGCgcgCCCGCGgcgacgagcuuggccGCCGcCGCGUCguUGCGg -3'
miRNA:   3'- uCGCGa--GGGCGU---------------CGGC-GCGCAG--GCGC- -5'
25545 5' -65.2 NC_005337.1 + 1667 0.69 0.335008
Target:  5'- aGGCGCgucgcgaaccugaaCCGCAGCCGCaGCGcgcgUCGCa -3'
miRNA:   3'- -UCGCGag------------GGCGUCGGCG-CGCa---GGCGc -5'
25545 5' -65.2 NC_005337.1 + 1849 0.77 0.095595
Target:  5'- gAGCGCgcagUUgGUGGCCGCGUGUCCGCu -3'
miRNA:   3'- -UCGCGa---GGgCGUCGGCGCGCAGGCGc -5'
25545 5' -65.2 NC_005337.1 + 1901 0.67 0.436413
Target:  5'- cGGCGgcCUccgggaacCCCGCAGUCGCcuaugucuaGCGUCUGCa -3'
miRNA:   3'- -UCGC--GA--------GGGCGUCGGCG---------CGCAGGCGc -5'
25545 5' -65.2 NC_005337.1 + 2083 0.66 0.489218
Target:  5'- aGGCGCa--CGguGUCgGCGCGcgCCGCGa -3'
miRNA:   3'- -UCGCGaggGCguCGG-CGCGCa-GGCGC- -5'
25545 5' -65.2 NC_005337.1 + 2088 0.67 0.411269
Target:  5'- cGCGCUCgaCGcCAGCgccagcgccucCGuCGCGUCCGUGu -3'
miRNA:   3'- uCGCGAGg-GC-GUCG-----------GC-GCGCAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 2211 0.66 0.480202
Target:  5'- gGGCGCggCCCG-GGCCGCGag-CgCGCGc -3'
miRNA:   3'- -UCGCGa-GGGCgUCGGCGCgcaG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.