miRNA display CGI


Results 1 - 20 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25545 5' -65.2 NC_005337.1 + 74544 0.74 0.147032
Target:  5'- cGCGCUCcgCCGCgcggcgcgugaugcuGGCCGCGCGgcaCGCGg -3'
miRNA:   3'- uCGCGAG--GGCG---------------UCGGCGCGCag-GCGC- -5'
25545 5' -65.2 NC_005337.1 + 48285 0.76 0.103051
Target:  5'- cGGCuGgaCCCGCGGUCGCGCcUCCGCa -3'
miRNA:   3'- -UCG-CgaGGGCGUCGGCGCGcAGGCGc -5'
25545 5' -65.2 NC_005337.1 + 25521 0.75 0.122626
Target:  5'- cGCGCUCCaggcaGCGGCCcaCGCG-CCGCGa -3'
miRNA:   3'- uCGCGAGGg----CGUCGGc-GCGCaGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 21895 0.75 0.129779
Target:  5'- cGGCGCUCCuccaggaCGCgcgcuucauggagguGGCCGCGCGcUCCGCc -3'
miRNA:   3'- -UCGCGAGG-------GCG---------------UCGGCGCGC-AGGCGc -5'
25545 5' -65.2 NC_005337.1 + 16037 0.75 0.132031
Target:  5'- cGCGCUgcggcgCCUGCcGCCGCGCGggCCGCu -3'
miRNA:   3'- uCGCGA------GGGCGuCGGCGCGCa-GGCGc -5'
25545 5' -65.2 NC_005337.1 + 25741 0.75 0.132031
Target:  5'- cGCGC-CCCGCAccGUCGCGCcGUCCaGCGu -3'
miRNA:   3'- uCGCGaGGGCGU--CGGCGCG-CAGG-CGC- -5'
25545 5' -65.2 NC_005337.1 + 50197 0.75 0.135311
Target:  5'- cGCGCU-CUGCGG-CGCGCGUCUGCa -3'
miRNA:   3'- uCGCGAgGGCGUCgGCGCGCAGGCGc -5'
25545 5' -65.2 NC_005337.1 + 58863 0.74 0.142098
Target:  5'- cGCGCUCgCGCGccGuCCGCGCaUCCGCGc -3'
miRNA:   3'- uCGCGAGgGCGU--C-GGCGCGcAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 38234 0.74 0.144546
Target:  5'- cGUGCUCCgGCuGCCugacgagacgcggcGCGCGUUCGCGc -3'
miRNA:   3'- uCGCGAGGgCGuCGG--------------CGCGCAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 44318 0.76 0.100507
Target:  5'- gAGCGCgUgCUGCGGCCGCGCcuuuaUCCGCGc -3'
miRNA:   3'- -UCGCG-AgGGCGUCGGCGCGc----AGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 45831 0.77 0.088652
Target:  5'- cGGCGUgUUCCGCGaCCgGCGCGUCCGCGg -3'
miRNA:   3'- -UCGCG-AGGGCGUcGG-CGCGCAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 133546 0.77 0.084079
Target:  5'- cGCGCUcucgcccgcguacCCCGCGGCCGCggGCGUgCGCGc -3'
miRNA:   3'- uCGCGA-------------GGGCGUCGGCG--CGCAgGCGC- -5'
25545 5' -65.2 NC_005337.1 + 124029 0.83 0.034361
Target:  5'- aGGCGC-CCCGCgaaGGCCGCGCGccugCCGCGg -3'
miRNA:   3'- -UCGCGaGGGCG---UCGGCGCGCa---GGCGC- -5'
25545 5' -65.2 NC_005337.1 + 90928 0.8 0.054674
Target:  5'- cGGCGUcuUCCCgGCGGCCaGCGCGUCgGCGa -3'
miRNA:   3'- -UCGCG--AGGG-CGUCGG-CGCGCAGgCGC- -5'
25545 5' -65.2 NC_005337.1 + 54084 0.8 0.056094
Target:  5'- cAGCGC--CCGCGGCaggaGCGCGUCCGCGc -3'
miRNA:   3'- -UCGCGagGGCGUCGg---CGCGCAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 711 0.8 0.059043
Target:  5'- cGCGCgcacgCCCGCGGCCGCGgGguaCGCGg -3'
miRNA:   3'- uCGCGa----GGGCGUCGGCGCgCag-GCGC- -5'
25545 5' -65.2 NC_005337.1 + 568 0.79 0.062141
Target:  5'- cGCGCguaCgCCGCGGCCGCGCGgaagCCGCc -3'
miRNA:   3'- uCGCGa--G-GGCGUCGGCGCGCa---GGCGc -5'
25545 5' -65.2 NC_005337.1 + 86097 0.79 0.065397
Target:  5'- --aGCUCCCGCAGCaGCGCcUCCGCGc -3'
miRNA:   3'- ucgCGAGGGCGUCGgCGCGcAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 46473 0.79 0.067085
Target:  5'- cGGCgaGCUCCCgggcaGCAGCCGCGCcuuggccucuauGUCCGCGg -3'
miRNA:   3'- -UCG--CGAGGG-----CGUCGGCGCG------------CAGGCGC- -5'
25545 5' -65.2 NC_005337.1 + 131409 0.79 0.067085
Target:  5'- cGUGUUCCCGCuGgCGCGCGgcUCCGCGg -3'
miRNA:   3'- uCGCGAGGGCGuCgGCGCGC--AGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.