miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25546 3' -59.7 NC_005337.1 + 97782 0.65 0.748399
Target:  5'- gCCgagCGcCGCGGcCGCGGccaggccGUGCgGCAGg -3'
miRNA:   3'- aGGa--GCuGCGCC-GCGUU-------CACGgCGUC- -5'
25546 3' -59.7 NC_005337.1 + 40297 0.65 0.748399
Target:  5'- cUCCUCGcccgaggGCGaUGGCgGCAAGgcaacUGCUGCGGu -3'
miRNA:   3'- -AGGAGC-------UGC-GCCG-CGUUC-----ACGGCGUC- -5'
25546 3' -59.7 NC_005337.1 + 34870 0.65 0.746496
Target:  5'- aCC-CGccgccCGCGGUGCGcagcaccggcagguGGUGCCGCGc -3'
miRNA:   3'- aGGaGCu----GCGCCGCGU--------------UCACGGCGUc -5'
25546 3' -59.7 NC_005337.1 + 26392 0.65 0.746496
Target:  5'- aCCacCGACuGCGGCaGCAGGUacgugcucgcggcgGCCGCGa -3'
miRNA:   3'- aGGa-GCUG-CGCCG-CGUUCA--------------CGGCGUc -5'
25546 3' -59.7 NC_005337.1 + 65582 0.66 0.739807
Target:  5'- uUCCUCGGguCGgGcGCGCAGGccaagagcgcgcUGCUGCAc -3'
miRNA:   3'- -AGGAGCU--GCgC-CGCGUUC------------ACGGCGUc -5'
25546 3' -59.7 NC_005337.1 + 68297 0.66 0.739807
Target:  5'- gCCggCGGCGUGGaCGCGcGUGCCcgaggaggGCGGc -3'
miRNA:   3'- aGGa-GCUGCGCC-GCGUuCACGG--------CGUC- -5'
25546 3' -59.7 NC_005337.1 + 53910 0.66 0.739807
Target:  5'- gUCCgCGAC-CGGCGCGAacgcGUGCUGguuCAGg -3'
miRNA:   3'- -AGGaGCUGcGCCGCGUU----CACGGC---GUC- -5'
25546 3' -59.7 NC_005337.1 + 59344 0.66 0.739807
Target:  5'- aUCCgcgCGGCcGCGcGCGCgAAG-GCCGcCAGc -3'
miRNA:   3'- -AGGa--GCUG-CGC-CGCG-UUCaCGGC-GUC- -5'
25546 3' -59.7 NC_005337.1 + 76950 0.66 0.739807
Target:  5'- cUCUUUuuaACGCGGCGCuug-GCCGCGc -3'
miRNA:   3'- -AGGAGc--UGCGCCGCGuucaCGGCGUc -5'
25546 3' -59.7 NC_005337.1 + 14892 0.66 0.739807
Target:  5'- cUCCaugcugUUGGCGCGGCGCcgauGGUGgaaGCAGc -3'
miRNA:   3'- -AGG------AGCUGCGCCGCGu---UCACgg-CGUC- -5'
25546 3' -59.7 NC_005337.1 + 121999 0.66 0.739807
Target:  5'- cUCCUgCGcGCGgGGUGCGAcccgGCCGCGa -3'
miRNA:   3'- -AGGA-GC-UGCgCCGCGUUca--CGGCGUc -5'
25546 3' -59.7 NC_005337.1 + 52641 0.66 0.739807
Target:  5'- cUCgUCGACG-GGCGCAAGcacgacgccUGCCugauggggcuGCGGa -3'
miRNA:   3'- -AGgAGCUGCgCCGCGUUC---------ACGG----------CGUC- -5'
25546 3' -59.7 NC_005337.1 + 108637 0.66 0.739807
Target:  5'- --aUCGACGCGGCcgugGCGGGcGaCCGCGc -3'
miRNA:   3'- aggAGCUGCGCCG----CGUUCaC-GGCGUc -5'
25546 3' -59.7 NC_005337.1 + 63533 0.66 0.739807
Target:  5'- gCCUCGGgcgUGCGGCGCucGUuuGCCGgAc -3'
miRNA:   3'- aGGAGCU---GCGCCGCGuuCA--CGGCgUc -5'
25546 3' -59.7 NC_005337.1 + 45333 0.66 0.739807
Target:  5'- gCCUCcGCGCGGUccGCGAGc-UCGCAGa -3'
miRNA:   3'- aGGAGcUGCGCCG--CGUUCacGGCGUC- -5'
25546 3' -59.7 NC_005337.1 + 18638 0.66 0.739807
Target:  5'- cUCCUCGGCgaugGCGGcCGCGcc-GCCGCc- -3'
miRNA:   3'- -AGGAGCUG----CGCC-GCGUucaCGGCGuc -5'
25546 3' -59.7 NC_005337.1 + 2780 0.66 0.739807
Target:  5'- gUCCaCGAgCGCGGa-CcGGUGCCGCAu -3'
miRNA:   3'- -AGGaGCU-GCGCCgcGuUCACGGCGUc -5'
25546 3' -59.7 NC_005337.1 + 25021 0.66 0.738847
Target:  5'- gCUUCGACGUGcGCGCGgcggacaccgaggAGcUGCUGCGc -3'
miRNA:   3'- aGGAGCUGCGC-CGCGU-------------UC-ACGGCGUc -5'
25546 3' -59.7 NC_005337.1 + 5854 0.66 0.738847
Target:  5'- aCCUCGcuggccugcggcuGCGUGGCGaGAGcgGCCGcCAGc -3'
miRNA:   3'- aGGAGC-------------UGCGCCGCgUUCa-CGGC-GUC- -5'
25546 3' -59.7 NC_005337.1 + 75175 0.66 0.730173
Target:  5'- cCCUCGuCGCcucGCGCGcGU-CCGCGGg -3'
miRNA:   3'- aGGAGCuGCGc--CGCGUuCAcGGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.