miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25546 5' -54.6 NC_005337.1 + 14206 0.66 0.937026
Target:  5'- cGCCAUcaGUCGUCGUcaucguggaUGUcguuauAGUCCUCGu -3'
miRNA:   3'- uUGGUG--CAGCAGCG---------ACA------UCAGGAGCu -5'
25546 5' -54.6 NC_005337.1 + 62547 0.66 0.937026
Target:  5'- uGACCgucGCGUCGUCGCgcaccuGcUUCUCGAa -3'
miRNA:   3'- -UUGG---UGCAGCAGCGacau--C-AGGAGCU- -5'
25546 5' -54.6 NC_005337.1 + 50989 0.66 0.937026
Target:  5'- cGCCGCGcguUCGUCGUcGgcccGGcCCUCGAg -3'
miRNA:   3'- uUGGUGC---AGCAGCGaCa---UCaGGAGCU- -5'
25546 5' -54.6 NC_005337.1 + 50019 0.66 0.92667
Target:  5'- uGACCACGUCGaCGCacacGUcGUCCagGAa -3'
miRNA:   3'- -UUGGUGCAGCaGCGa---CAuCAGGagCU- -5'
25546 5' -54.6 NC_005337.1 + 9994 0.66 0.92667
Target:  5'- cGGCCACGgcaggguucUCGUCGUccgGgacgauGUCCUCGGg -3'
miRNA:   3'- -UUGGUGC---------AGCAGCGa--Cau----CAGGAGCU- -5'
25546 5' -54.6 NC_005337.1 + 34221 0.66 0.921121
Target:  5'- uGGCCACGUCGaccaCGCgcacGGUCCcgUCGAg -3'
miRNA:   3'- -UUGGUGCAGCa---GCGaca-UCAGG--AGCU- -5'
25546 5' -54.6 NC_005337.1 + 35154 0.66 0.915325
Target:  5'- gGAUCGCGUCGcuggCGgaGUGGUCggCGAc -3'
miRNA:   3'- -UUGGUGCAGCa---GCgaCAUCAGgaGCU- -5'
25546 5' -54.6 NC_005337.1 + 74058 0.66 0.915325
Target:  5'- gGACCuCGUCugccaGCUGgggaAGUCCUCGGg -3'
miRNA:   3'- -UUGGuGCAGcag--CGACa---UCAGGAGCU- -5'
25546 5' -54.6 NC_005337.1 + 85481 0.67 0.909282
Target:  5'- cGugCAgGuUUGUCGCacGUAGUUCUCGAa -3'
miRNA:   3'- -UugGUgC-AGCAGCGa-CAUCAGGAGCU- -5'
25546 5' -54.6 NC_005337.1 + 76771 0.67 0.909282
Target:  5'- cGCCACGaaga-GCUgGUAGUCCUUGAg -3'
miRNA:   3'- uUGGUGCagcagCGA-CAUCAGGAGCU- -5'
25546 5' -54.6 NC_005337.1 + 1675 0.67 0.902995
Target:  5'- cGCCGCGUCGUUGCgGU-GcCCgguggCGAa -3'
miRNA:   3'- uUGGUGCAGCAGCGaCAuCaGGa----GCU- -5'
25546 5' -54.6 NC_005337.1 + 40489 0.67 0.902995
Target:  5'- cGACCACGUCGUaGCgc--GUCCggCGAu -3'
miRNA:   3'- -UUGGUGCAGCAgCGacauCAGGa-GCU- -5'
25546 5' -54.6 NC_005337.1 + 49823 0.67 0.89845
Target:  5'- cGGCCGCGcccuccgcgggcuccUCGUC-CUccucuuccucuucGUAGUCCUCGAu -3'
miRNA:   3'- -UUGGUGC---------------AGCAGcGA-------------CAUCAGGAGCU- -5'
25546 5' -54.6 NC_005337.1 + 49676 0.67 0.882697
Target:  5'- cACCACGgCGUCGCUcGUGGUCa---- -3'
miRNA:   3'- uUGGUGCaGCAGCGA-CAUCAGgagcu -5'
25546 5' -54.6 NC_005337.1 + 124195 0.67 0.882697
Target:  5'- cACCACGUCGUCGgaGgAGgacUCCgacagCGAc -3'
miRNA:   3'- uUGGUGCAGCAGCgaCaUC---AGGa----GCU- -5'
25546 5' -54.6 NC_005337.1 + 76151 0.67 0.875464
Target:  5'- -uCCACGUCGUCGaagaUGgAGgCCUCGu -3'
miRNA:   3'- uuGGUGCAGCAGCg---ACaUCaGGAGCu -5'
25546 5' -54.6 NC_005337.1 + 17796 0.67 0.875464
Target:  5'- cAGgCGCGUCuGUCGCgugaaGUAcUCCUCGAu -3'
miRNA:   3'- -UUgGUGCAG-CAGCGa----CAUcAGGAGCU- -5'
25546 5' -54.6 NC_005337.1 + 21757 0.67 0.875464
Target:  5'- uGCaCAUGUCGcagCGCUGcgaGGUCUUCGAc -3'
miRNA:   3'- uUG-GUGCAGCa--GCGACa--UCAGGAGCU- -5'
25546 5' -54.6 NC_005337.1 + 41687 0.67 0.873251
Target:  5'- -uCCACGUCGUCgaagcacguccggaGCcGgccGUCCUCGAa -3'
miRNA:   3'- uuGGUGCAGCAG--------------CGaCau-CAGGAGCU- -5'
25546 5' -54.6 NC_005337.1 + 60995 0.69 0.827554
Target:  5'- gGAgCGCGUUGauguccuccaCGCUGUAGUCCUCc- -3'
miRNA:   3'- -UUgGUGCAGCa---------GCGACAUCAGGAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.