miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25547 3' -53.9 NC_005337.1 + 51968 0.66 0.959228
Target:  5'- cGGGGcaaGGAGaaGCUGGCgGCgGCGg -3'
miRNA:   3'- -CCCCaa-CUUCaaCGACUGgUGgCGCg -5'
25547 3' -53.9 NC_005337.1 + 19251 0.66 0.959228
Target:  5'- aGGGGcaGAGGaUGCUcuUguCCGCGCg -3'
miRNA:   3'- -CCCCaaCUUCaACGAcuGguGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 114945 0.66 0.959228
Target:  5'- -----cGGAGcUGCUGGCCAUCGCa- -3'
miRNA:   3'- ccccaaCUUCaACGACUGGUGGCGcg -5'
25547 3' -53.9 NC_005337.1 + 76044 0.66 0.959228
Target:  5'- -----cGGAcUUGCgcuccaUGACCGCCGCGCg -3'
miRNA:   3'- ccccaaCUUcAACG------ACUGGUGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 108140 0.66 0.95811
Target:  5'- uGGuGGUguccgacaaccgucUGGAGgcGgaGAUCGCCGCGg -3'
miRNA:   3'- -CC-CCA--------------ACUUCaaCgaCUGGUGGCGCg -5'
25547 3' -53.9 NC_005337.1 + 36409 0.66 0.955421
Target:  5'- -cGGUUGAGcacgGCggcGGCCACCGCcaGCg -3'
miRNA:   3'- ccCCAACUUcaa-CGa--CUGGUGGCG--CG- -5'
25547 3' -53.9 NC_005337.1 + 9911 0.66 0.955421
Target:  5'- aGGaGggGAAGaUGCgGGCCAgCGCGg -3'
miRNA:   3'- cCC-CaaCUUCaACGaCUGGUgGCGCg -5'
25547 3' -53.9 NC_005337.1 + 75118 0.66 0.95138
Target:  5'- uGGGGgagGAAcgucGUgggGCUGuACCGCaCGgGCa -3'
miRNA:   3'- -CCCCaa-CUU----CAa--CGAC-UGGUG-GCgCG- -5'
25547 3' -53.9 NC_005337.1 + 60807 0.66 0.95138
Target:  5'- uGGGGUccuccGcGGgcacGCgGcACCGCCGCGCg -3'
miRNA:   3'- -CCCCAa----CuUCaa--CGaC-UGGUGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 5333 0.66 0.95138
Target:  5'- cGGGGaUUGuGGgcGCUcGAUucagCACCGCGUu -3'
miRNA:   3'- -CCCC-AACuUCaaCGA-CUG----GUGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 99425 0.66 0.95138
Target:  5'- cGGGUgcg---UGCUGAgCCGCgGCGUg -3'
miRNA:   3'- cCCCAacuucaACGACU-GGUGgCGCG- -5'
25547 3' -53.9 NC_005337.1 + 105266 0.66 0.950962
Target:  5'- uGGGGccGccGUgGCUGACCcugggcgGCCGcCGCu -3'
miRNA:   3'- -CCCCaaCuuCAaCGACUGG-------UGGC-GCG- -5'
25547 3' -53.9 NC_005337.1 + 27787 0.66 0.9471
Target:  5'- -----cGGAGUUGCggGAgCAUCGCGCc -3'
miRNA:   3'- ccccaaCUUCAACGa-CUgGUGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 15451 0.66 0.9471
Target:  5'- -cGGUccaGGAGacacugGCUGGCCACCgacgGCGCg -3'
miRNA:   3'- ccCCAa--CUUCaa----CGACUGGUGG----CGCG- -5'
25547 3' -53.9 NC_005337.1 + 13976 0.66 0.9471
Target:  5'- aGGGGgaugcGGAGcgUGCcGGCCAUguacuUGCGCg -3'
miRNA:   3'- -CCCCaa---CUUCa-ACGaCUGGUG-----GCGCG- -5'
25547 3' -53.9 NC_005337.1 + 35999 0.66 0.9471
Target:  5'- -aGGagGAAGcgGgUGACCACCGuCGUg -3'
miRNA:   3'- ccCCaaCUUCaaCgACUGGUGGC-GCG- -5'
25547 3' -53.9 NC_005337.1 + 61891 0.66 0.942579
Target:  5'- cGGGGgcuc----GCUGACCGcgacggccguCCGCGCg -3'
miRNA:   3'- -CCCCaacuucaaCGACUGGU----------GGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 125490 0.66 0.939749
Target:  5'- aGGGGUuccucggcaucgaggUGGAGgucgUGC-GGCUGCuCGUGCg -3'
miRNA:   3'- -CCCCA---------------ACUUCa---ACGaCUGGUG-GCGCG- -5'
25547 3' -53.9 NC_005337.1 + 40554 0.66 0.937814
Target:  5'- cGGGUcgcUGGAGgccGCgucgaGCCGCCGCGg -3'
miRNA:   3'- cCCCA---ACUUCaa-CGac---UGGUGGCGCg -5'
25547 3' -53.9 NC_005337.1 + 77224 0.66 0.937814
Target:  5'- aGGGGUUGAGG-UGCgucagGAagacguacuCCAugaaguCCGUGCu -3'
miRNA:   3'- -CCCCAACUUCaACGa----CU---------GGU------GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.