miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25547 3' -53.9 NC_005337.1 + 968 0.74 0.591643
Target:  5'- cGGGGcUGGAGcggcgggGCUGGCgCGgCGCGCg -3'
miRNA:   3'- -CCCCaACUUCaa-----CGACUG-GUgGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 968 0.74 0.591643
Target:  5'- cGGGGcUGGAGcggcgggGCUGGCgCGgCGCGCg -3'
miRNA:   3'- -CCCCaACUUCaa-----CGACUG-GUgGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 1545 0.67 0.927546
Target:  5'- cGGGcGgcGAcc--GCuUGAUCACCGCGCg -3'
miRNA:   3'- -CCC-CaaCUucaaCG-ACUGGUGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 5333 0.66 0.95138
Target:  5'- cGGGGaUUGuGGgcGCUcGAUucagCACCGCGUu -3'
miRNA:   3'- -CCCC-AACuUCaaCGA-CUG----GUGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 5608 0.68 0.904048
Target:  5'- cGGGGgacGAGcGUcucggUGCacGACCgGCCGCGCa -3'
miRNA:   3'- -CCCCaa-CUU-CA-----ACGa-CUGG-UGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 5831 0.67 0.934837
Target:  5'- cGGcGGUgUGAAGUgcggccgcgaccucGCUGGCCugcgGCUGCGUg -3'
miRNA:   3'- -CC-CCA-ACUUCAa-------------CGACUGG----UGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 5878 0.68 0.890841
Target:  5'- uGGcGUUGggGgacagGCgGACCACgcggaGCGCg -3'
miRNA:   3'- cCC-CAACuuCaa---CGaCUGGUGg----CGCG- -5'
25547 3' -53.9 NC_005337.1 + 5986 0.69 0.86701
Target:  5'- cGGGccaggcgcgcgcGUUGCaGACCGCCGCGUg -3'
miRNA:   3'- cCCCaacuu-------CAACGaCUGGUGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 6523 0.69 0.856958
Target:  5'- cGGGGUgGAAGgcgcgGUUGACCACgaacuccuucagcaGCGUg -3'
miRNA:   3'- -CCCCAaCUUCaa---CGACUGGUGg-------------CGCG- -5'
25547 3' -53.9 NC_005337.1 + 6643 0.74 0.591643
Target:  5'- aGGGUUGAA------GACCGCCGCGCg -3'
miRNA:   3'- cCCCAACUUcaacgaCUGGUGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 7963 0.85 0.155226
Target:  5'- cGGGGUgaGggGUUccGUUGGCCACUGCGCg -3'
miRNA:   3'- -CCCCAa-CuuCAA--CGACUGGUGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 8270 0.69 0.869278
Target:  5'- gGGGGUUGAAc--GC-GGCCGCgaCGUGCa -3'
miRNA:   3'- -CCCCAACUUcaaCGaCUGGUG--GCGCG- -5'
25547 3' -53.9 NC_005337.1 + 9911 0.66 0.955421
Target:  5'- aGGaGggGAAGaUGCgGGCCAgCGCGg -3'
miRNA:   3'- cCC-CaaCUUCaACGaCUGGUgGCGCg -5'
25547 3' -53.9 NC_005337.1 + 13976 0.66 0.9471
Target:  5'- aGGGGgaugcGGAGcgUGCcGGCCAUguacuUGCGCg -3'
miRNA:   3'- -CCCCaa---CUUCa-ACGaCUGGUG-----GCGCG- -5'
25547 3' -53.9 NC_005337.1 + 15451 0.66 0.9471
Target:  5'- -cGGUccaGGAGacacugGCUGGCCACCgacgGCGCg -3'
miRNA:   3'- ccCCAa--CUUCaa----CGACUGGUGG----CGCG- -5'
25547 3' -53.9 NC_005337.1 + 17219 0.66 0.937814
Target:  5'- aGGGG-UGAAGgauguagaUGUUGuCCACCuGCaGCg -3'
miRNA:   3'- -CCCCaACUUCa-------ACGACuGGUGG-CG-CG- -5'
25547 3' -53.9 NC_005337.1 + 19251 0.66 0.959228
Target:  5'- aGGGGcaGAGGaUGCUcuUguCCGCGCg -3'
miRNA:   3'- -CCCCaaCUUCaACGAcuGguGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 20490 0.67 0.921477
Target:  5'- cGGGGUUGAGcGUuuucagaUGCgUGACCgcACCGacagugaGCa -3'
miRNA:   3'- -CCCCAACUU-CA-------ACG-ACUGG--UGGCg------CG- -5'
25547 3' -53.9 NC_005337.1 + 27787 0.66 0.9471
Target:  5'- -----cGGAGUUGCggGAgCAUCGCGCc -3'
miRNA:   3'- ccccaaCUUCAACGa-CUgGUGGCGCG- -5'
25547 3' -53.9 NC_005337.1 + 28898 0.69 0.869278
Target:  5'- --uGUUGAGGaUGCUGGCCuCCGCu- -3'
miRNA:   3'- cccCAACUUCaACGACUGGuGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.