miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25547 5' -64.7 NC_005337.1 + 23740 0.65 0.546785
Target:  5'- cGGCAaaacacagccuggUGGgCGCCGUGUUCaccacGCGCGa -3'
miRNA:   3'- cCCGU-------------GCCgGCGGCGCAAGgc---CGCGC- -5'
25547 5' -64.7 NC_005337.1 + 64868 0.65 0.544908
Target:  5'- aGGGCacauguccgcgaucGCGuGCCGCCucacagagGCGgacCUGGCGCu -3'
miRNA:   3'- -CCCG--------------UGC-CGGCGG--------CGCaa-GGCCGCGc -5'
25547 5' -64.7 NC_005337.1 + 89698 0.65 0.54397
Target:  5'- uGGCggagacgccgaucGCGGCgGCCGCGUcgucacugucgcccUCCGccaCGCGg -3'
miRNA:   3'- cCCG-------------UGCCGgCGGCGCA--------------AGGCc--GCGC- -5'
25547 5' -64.7 NC_005337.1 + 122210 0.66 0.538355
Target:  5'- cGGGCGCGGa---CGUGU--CGGCGCGc -3'
miRNA:   3'- -CCCGUGCCggcgGCGCAagGCCGCGC- -5'
25547 5' -64.7 NC_005337.1 + 30947 0.66 0.538355
Target:  5'- cGGGCG-GGUgaGCCGC---CCGGCGCc -3'
miRNA:   3'- -CCCGUgCCGg-CGGCGcaaGGCCGCGc -5'
25547 5' -64.7 NC_005337.1 + 115434 0.66 0.538355
Target:  5'- cGGCGCGuGCUGgCGauaGagCCGGCGUa -3'
miRNA:   3'- cCCGUGC-CGGCgGCg--CaaGGCCGCGc -5'
25547 5' -64.7 NC_005337.1 + 12349 0.66 0.538355
Target:  5'- -aGCGCcGuCCGuCCGCGgacgUCgCGGCGCGu -3'
miRNA:   3'- ccCGUGcC-GGC-GGCGCa---AG-GCCGCGC- -5'
25547 5' -64.7 NC_005337.1 + 123871 0.66 0.538355
Target:  5'- cGGGCGCGGCgcguacgGCCuCGUcuucauUCCGGaggGCGa -3'
miRNA:   3'- -CCCGUGCCGg------CGGcGCA------AGGCCg--CGC- -5'
25547 5' -64.7 NC_005337.1 + 68291 0.66 0.538355
Target:  5'- cGGC-CGGCCgGCgGCGUggaCGcGCGUGc -3'
miRNA:   3'- cCCGuGCCGG-CGgCGCAag-GC-CGCGC- -5'
25547 5' -64.7 NC_005337.1 + 131897 0.66 0.538355
Target:  5'- cGGGCgcgcacguggacGCGGUCGaCCgGUGcUgCGGCGCGc -3'
miRNA:   3'- -CCCG------------UGCCGGC-GG-CGCaAgGCCGCGC- -5'
25547 5' -64.7 NC_005337.1 + 115360 0.66 0.538355
Target:  5'- cGGGUACGcGCUcaaGcCCGCGacgcUCCaGCGCGu -3'
miRNA:   3'- -CCCGUGC-CGG---C-GGCGCa---AGGcCGCGC- -5'
25547 5' -64.7 NC_005337.1 + 83853 0.66 0.538355
Target:  5'- cGGGCggaaGCGcCCGCCGC--UCCGucaccgacGCGCGg -3'
miRNA:   3'- -CCCG----UGCcGGCGGCGcaAGGC--------CGCGC- -5'
25547 5' -64.7 NC_005337.1 + 100367 0.66 0.537421
Target:  5'- gGGGCGCcugaaGUCGCCGCcuucgugcaucgaGUgcgCgGGCGCGc -3'
miRNA:   3'- -CCCGUGc----CGGCGGCG-------------CAa--GgCCGCGC- -5'
25547 5' -64.7 NC_005337.1 + 38998 0.66 0.535555
Target:  5'- cGGGCGCuggggaaauaccugGGCC-CgCGCGUcugCCGcGCGCa -3'
miRNA:   3'- -CCCGUG--------------CCGGcG-GCGCAa--GGC-CGCGc -5'
25547 5' -64.7 NC_005337.1 + 54110 0.66 0.53276
Target:  5'- cGGGCGCuGCUacguggagcgcgacgGCCGCG--CCGcGCGCa -3'
miRNA:   3'- -CCCGUGcCGG---------------CGGCGCaaGGC-CGCGc -5'
25547 5' -64.7 NC_005337.1 + 126825 0.66 0.529042
Target:  5'- -cGcCACGGaCGCCGaCGUgaacuUCCGGgGCGa -3'
miRNA:   3'- ccC-GUGCCgGCGGC-GCA-----AGGCCgCGC- -5'
25547 5' -64.7 NC_005337.1 + 124305 0.66 0.529042
Target:  5'- aGGaCGCGGCCuccGUCGCGgcgCaGGCGCu -3'
miRNA:   3'- cCC-GUGCCGG---CGGCGCaa-GgCCGCGc -5'
25547 5' -64.7 NC_005337.1 + 44490 0.66 0.529042
Target:  5'- aGGCGCGGCCGCgucaccgaCGCGcaaCUcGCGCu -3'
miRNA:   3'- cCCGUGCCGGCG--------GCGCaa-GGcCGCGc -5'
25547 5' -64.7 NC_005337.1 + 52578 0.66 0.529042
Target:  5'- cGGGgACGG-CGCgGCGgcgCUGGCGg- -3'
miRNA:   3'- -CCCgUGCCgGCGgCGCaa-GGCCGCgc -5'
25547 5' -64.7 NC_005337.1 + 57876 0.66 0.529042
Target:  5'- cGGGCGCcacGCC-CCGCGcgCaCGGUGUa -3'
miRNA:   3'- -CCCGUGc--CGGcGGCGCaaG-GCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.