miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25548 3' -61.4 NC_005337.1 + 3002 0.66 0.609939
Target:  5'- gACUgGCGgaCGGGCuccGGCAgCGCGu- -3'
miRNA:   3'- aUGAgCGCgaGCCCG---UCGUgGCGCuu -5'
25548 3' -61.4 NC_005337.1 + 17596 0.66 0.609939
Target:  5'- gGCUCGCcCgCGGGCGGCugCaGCa-- -3'
miRNA:   3'- aUGAGCGcGaGCCCGUCGugG-CGcuu -5'
25548 3' -61.4 NC_005337.1 + 84887 0.66 0.609939
Target:  5'- uUACUCGgcCGCgggGGGCGGUGCgGCGGu -3'
miRNA:   3'- -AUGAGC--GCGag-CCCGUCGUGgCGCUu -5'
25548 3' -61.4 NC_005337.1 + 118194 0.66 0.609939
Target:  5'- aGCUCGCGCcggUGGGC-GCggaGCCGCc-- -3'
miRNA:   3'- aUGAGCGCGa--GCCCGuCG---UGGCGcuu -5'
25548 3' -61.4 NC_005337.1 + 124623 0.66 0.609939
Target:  5'- aGCUCaCGCgCGGGCugcucAGCAUCGCGc- -3'
miRNA:   3'- aUGAGcGCGaGCCCG-----UCGUGGCGCuu -5'
25548 3' -61.4 NC_005337.1 + 29559 0.66 0.599819
Target:  5'- cACUCGCuGCUCaGGUGGCACaGCa-- -3'
miRNA:   3'- aUGAGCG-CGAGcCCGUCGUGgCGcuu -5'
25548 3' -61.4 NC_005337.1 + 49535 0.66 0.589721
Target:  5'- cGCgCGCGCgCGGGagaccagcucCGGCGCCGgGAAc -3'
miRNA:   3'- aUGaGCGCGaGCCC----------GUCGUGGCgCUU- -5'
25548 3' -61.4 NC_005337.1 + 95251 0.66 0.589721
Target:  5'- cACUCGUGCgCGcGGCAG-ACgCGCGGg -3'
miRNA:   3'- aUGAGCGCGaGC-CCGUCgUG-GCGCUu -5'
25548 3' -61.4 NC_005337.1 + 23919 0.66 0.589721
Target:  5'- cGCgcccgCGCGCcCGcGGCAgGCGCgCGCGAc -3'
miRNA:   3'- aUGa----GCGCGaGC-CCGU-CGUG-GCGCUu -5'
25548 3' -61.4 NC_005337.1 + 40542 0.66 0.579655
Target:  5'- gGCUUGCGCcggCGGGUcGCuggagGCCGCGu- -3'
miRNA:   3'- aUGAGCGCGa--GCCCGuCG-----UGGCGCuu -5'
25548 3' -61.4 NC_005337.1 + 2080 0.66 0.579655
Target:  5'- aGCagGCGCacggugUCGGcGC-GCGCCGCGAGc -3'
miRNA:   3'- aUGagCGCG------AGCC-CGuCGUGGCGCUU- -5'
25548 3' -61.4 NC_005337.1 + 65199 0.66 0.579655
Target:  5'- aGCUCGUGCUCGuGCAccCGCCGCu-- -3'
miRNA:   3'- aUGAGCGCGAGCcCGUc-GUGGCGcuu -5'
25548 3' -61.4 NC_005337.1 + 59076 0.66 0.579655
Target:  5'- gGCUgGCGCUgGucucGCGGC-CCGCGGAc -3'
miRNA:   3'- aUGAgCGCGAgCc---CGUCGuGGCGCUU- -5'
25548 3' -61.4 NC_005337.1 + 48320 0.66 0.569624
Target:  5'- cGCgggCGCGCUgaCGGGCaugagccgGGCGCCgGUGAAc -3'
miRNA:   3'- aUGa--GCGCGA--GCCCG--------UCGUGG-CGCUU- -5'
25548 3' -61.4 NC_005337.1 + 35307 0.66 0.569624
Target:  5'- cGCUCGCGgagUCGaagaCGGCGCCGCGGAc -3'
miRNA:   3'- aUGAGCGCg--AGCcc--GUCGUGGCGCUU- -5'
25548 3' -61.4 NC_005337.1 + 133099 0.66 0.569624
Target:  5'- cGCUCGCGCaccgccuagCGGGCcgcuccgccGGCGcgcuccCCGCGGAg -3'
miRNA:   3'- aUGAGCGCGa--------GCCCG---------UCGU------GGCGCUU- -5'
25548 3' -61.4 NC_005337.1 + 5963 0.66 0.563627
Target:  5'- cGCUCGCGCcgcgcgcgagcagaCGGGCcaGGCGCgCGCGu- -3'
miRNA:   3'- aUGAGCGCGa-------------GCCCG--UCGUG-GCGCuu -5'
25548 3' -61.4 NC_005337.1 + 117323 0.66 0.559638
Target:  5'- cGCaCGCGUUCGGGUucuccAGgGCCGUGGu -3'
miRNA:   3'- aUGaGCGCGAGCCCG-----UCgUGGCGCUu -5'
25548 3' -61.4 NC_005337.1 + 37509 0.66 0.556651
Target:  5'- cUGCggaaGCGCUCGgacuucucguggauGGCGGCGCCGuUGAGg -3'
miRNA:   3'- -AUGag--CGCGAGC--------------CCGUCGUGGC-GCUU- -5'
25548 3' -61.4 NC_005337.1 + 41392 0.67 0.5497
Target:  5'- aAC-CGCGCgCGGGCagaugacguccGGCGuCCGCGGGa -3'
miRNA:   3'- aUGaGCGCGaGCCCG-----------UCGU-GGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.