miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25548 3' -61.4 NC_005337.1 + 110633 1.04 0.0014
Target:  5'- gUACUCGCGCUCGGGCAGCACCGCGAAg -3'
miRNA:   3'- -AUGAGCGCGAGCCCGUCGUGGCGCUU- -5'
25548 3' -61.4 NC_005337.1 + 5737 0.78 0.112126
Target:  5'- aUGC-CGCGCUCGGGCucuGGCACgGCGGc -3'
miRNA:   3'- -AUGaGCGCGAGCCCG---UCGUGgCGCUu -5'
25548 3' -61.4 NC_005337.1 + 57436 0.77 0.127606
Target:  5'- gACUaCGCGCUCcGGC-GCACCGCGAGc -3'
miRNA:   3'- aUGA-GCGCGAGcCCGuCGUGGCGCUU- -5'
25548 3' -61.4 NC_005337.1 + 42771 0.76 0.156524
Target:  5'- cGCguucgUGUGCUCGGGCGGCAgCGUGAc -3'
miRNA:   3'- aUGa----GCGCGAGCCCGUCGUgGCGCUu -5'
25548 3' -61.4 NC_005337.1 + 44515 0.75 0.177493
Target:  5'- aACUCGCGCUCGcGGCGGagcuccucggcUACCGCGu- -3'
miRNA:   3'- aUGAGCGCGAGC-CCGUC-----------GUGGCGCuu -5'
25548 3' -61.4 NC_005337.1 + 99579 0.74 0.191243
Target:  5'- cUGCUCGUGCggcgcuUCGGGCGggacuGCGCCGUGAGc -3'
miRNA:   3'- -AUGAGCGCG------AGCCCGU-----CGUGGCGCUU- -5'
25548 3' -61.4 NC_005337.1 + 105407 0.74 0.200428
Target:  5'- cACUCGCGCgcgcugaucgccgUCGGGU-GCAUCGCGGAg -3'
miRNA:   3'- aUGAGCGCG-------------AGCCCGuCGUGGCGCUU- -5'
25548 3' -61.4 NC_005337.1 + 37645 0.74 0.216237
Target:  5'- cGC-CGCGgUCGGGCuuCACCGCGAu -3'
miRNA:   3'- aUGaGCGCgAGCCCGucGUGGCGCUu -5'
25548 3' -61.4 NC_005337.1 + 95901 0.73 0.232541
Target:  5'- cGCUCGUGCUCGcGGCgacGGCgGCCGCGc- -3'
miRNA:   3'- aUGAGCGCGAGC-CCG---UCG-UGGCGCuu -5'
25548 3' -61.4 NC_005337.1 + 69449 0.73 0.243976
Target:  5'- aGCUCGCGCgcgcacaUGGGCAgGUACCGgGAGg -3'
miRNA:   3'- aUGAGCGCGa------GCCCGU-CGUGGCgCUU- -5'
25548 3' -61.4 NC_005337.1 + 129527 0.72 0.268246
Target:  5'- cUGCUCGCGCgCGGcGCgAGCGuCCGUGAu -3'
miRNA:   3'- -AUGAGCGCGaGCC-CG-UCGU-GGCGCUu -5'
25548 3' -61.4 NC_005337.1 + 14438 0.72 0.268246
Target:  5'- cGCUgGCGC-CGGGUaccgAGCGCCGCGc- -3'
miRNA:   3'- aUGAgCGCGaGCCCG----UCGUGGCGCuu -5'
25548 3' -61.4 NC_005337.1 + 44414 0.72 0.27461
Target:  5'- aGCgCGCGCUCGGagaaGCAGCucgagGCCGUGAAg -3'
miRNA:   3'- aUGaGCGCGAGCC----CGUCG-----UGGCGCUU- -5'
25548 3' -61.4 NC_005337.1 + 7865 0.72 0.281094
Target:  5'- --gUCGCGCgcCGGGCGGCcuugGCCGUGAu -3'
miRNA:   3'- augAGCGCGa-GCCCGUCG----UGGCGCUu -5'
25548 3' -61.4 NC_005337.1 + 3616 0.71 0.301276
Target:  5'- cACUCGCGgUCgcaGGGCaccugugcguccAGCGCCGCGGc -3'
miRNA:   3'- aUGAGCGCgAG---CCCG------------UCGUGGCGCUu -5'
25548 3' -61.4 NC_005337.1 + 89970 0.71 0.308247
Target:  5'- aGCaCGCGCUCGGgggaGCGGCGCCGUa-- -3'
miRNA:   3'- aUGaGCGCGAGCC----CGUCGUGGCGcuu -5'
25548 3' -61.4 NC_005337.1 + 16050 0.71 0.3132
Target:  5'- gGCUcCGCGCacugcaugaugacgUCGGGCGGCuCCGCGc- -3'
miRNA:   3'- aUGA-GCGCG--------------AGCCCGUCGuGGCGCuu -5'
25548 3' -61.4 NC_005337.1 + 31461 0.71 0.315341
Target:  5'- aACUUGcCGCU-GaGCAGCGCCGCGAAg -3'
miRNA:   3'- aUGAGC-GCGAgCcCGUCGUGGCGCUU- -5'
25548 3' -61.4 NC_005337.1 + 24048 0.71 0.315341
Target:  5'- aGCU-GUGCUCGGGCGacGCGgCCGCGGc -3'
miRNA:   3'- aUGAgCGCGAGCCCGU--CGU-GGCGCUu -5'
25548 3' -61.4 NC_005337.1 + 60640 0.7 0.352645
Target:  5'- gUGCUCGaGCUCGaaCGGCACCGUGAc -3'
miRNA:   3'- -AUGAGCgCGAGCccGUCGUGGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.