miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25548 5' -54.9 NC_005337.1 + 93528 0.66 0.93588
Target:  5'- cGUaCACGAuGCGGCCgcAGuuGGACa -3'
miRNA:   3'- cCAaGUGCUuCGCCGGgcUCuuCCUG- -5'
25548 5' -54.9 NC_005337.1 + 67134 0.66 0.93588
Target:  5'- cGG-UCGCGAAGUGccGCgCGuGGAAGGAg -3'
miRNA:   3'- -CCaAGUGCUUCGC--CGgGC-UCUUCCUg -5'
25548 5' -54.9 NC_005337.1 + 2096 0.66 0.93588
Target:  5'- cGGcgCGCGccGCGaGCCCGGucAGGcACg -3'
miRNA:   3'- -CCaaGUGCuuCGC-CGGGCUcuUCC-UG- -5'
25548 5' -54.9 NC_005337.1 + 98406 0.66 0.93588
Target:  5'- gGGUUCAUGgcGgGGaCCaccauGGAGGGCg -3'
miRNA:   3'- -CCAAGUGCuuCgCC-GGgcu--CUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 59665 0.66 0.93081
Target:  5'- --aUCACGucgucGCGGCuCCGGGAGGcGCc -3'
miRNA:   3'- ccaAGUGCuu---CGCCG-GGCUCUUCcUG- -5'
25548 5' -54.9 NC_005337.1 + 103308 0.66 0.93081
Target:  5'- uGGUUCuacaacuaccGCGAggAGCGGCU---GGAGGACa -3'
miRNA:   3'- -CCAAG----------UGCU--UCGCCGGgcuCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 86848 0.66 0.93081
Target:  5'- aGUcgCACGAAagacacCGGUCCuGGAAGGACa -3'
miRNA:   3'- cCAa-GUGCUUc-----GCCGGGcUCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 77412 0.66 0.925496
Target:  5'- aGGUggaugUGCGGgcccAGCgaGGCCCGcguGGAGGGCa -3'
miRNA:   3'- -CCAa----GUGCU----UCG--CCGGGCu--CUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 103003 0.66 0.925496
Target:  5'- cGUgCcCGAGcGCGGCCCGcAGGuGGGGCu -3'
miRNA:   3'- cCAaGuGCUU-CGCCGGGC-UCU-UCCUG- -5'
25548 5' -54.9 NC_005337.1 + 66073 0.66 0.919938
Target:  5'- --aUCGCGGAcGCGGCCgCGGcGgcGGAg -3'
miRNA:   3'- ccaAGUGCUU-CGCCGG-GCU-CuuCCUg -5'
25548 5' -54.9 NC_005337.1 + 80482 0.66 0.918224
Target:  5'- cGGgagCACGuacucgaugcgccccGCGGCCgGGGgcGGGCa -3'
miRNA:   3'- -CCaa-GUGCuu-------------CGCCGGgCUCuuCCUG- -5'
25548 5' -54.9 NC_005337.1 + 94060 0.66 0.916487
Target:  5'- aGGUUC-CGGGaacgggcuggucccuGCGGCCgGGcacccGAGGGGCg -3'
miRNA:   3'- -CCAAGuGCUU---------------CGCCGGgCU-----CUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 25580 0.66 0.914137
Target:  5'- aGGaaCACGGAGuCGGUgucgCCGuagacgcugcGGAAGGACa -3'
miRNA:   3'- -CCaaGUGCUUC-GCCG----GGC----------UCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 58739 0.66 0.914137
Target:  5'- --cUCGCuAAGCGGCaCG-GAGGGGCu -3'
miRNA:   3'- ccaAGUGcUUCGCCGgGCuCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 93698 0.66 0.914137
Target:  5'- -cUUCGCcagcGAGCGGUCCauGGAGGACa -3'
miRNA:   3'- ccAAGUGc---UUCGCCGGGcuCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 84381 0.67 0.908095
Target:  5'- cGGUggUCGcCGGGuucGCGGa-CGAGGAGGACg -3'
miRNA:   3'- -CCA--AGU-GCUU---CGCCggGCUCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 20658 0.67 0.908095
Target:  5'- cGGccucgCACGgcGCGGaCC-AGAGGGGCg -3'
miRNA:   3'- -CCaa---GUGCuuCGCCgGGcUCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 64574 0.67 0.901811
Target:  5'- --cUgGCGAAGCGGUCgaAGAAGGAg -3'
miRNA:   3'- ccaAgUGCUUCGCCGGgcUCUUCCUg -5'
25548 5' -54.9 NC_005337.1 + 9512 0.67 0.901811
Target:  5'- uGGccgUCACcauGCGGCCgGGGGAGG-Cu -3'
miRNA:   3'- -CCa--AGUGcuuCGCCGGgCUCUUCCuG- -5'
25548 5' -54.9 NC_005337.1 + 97769 0.67 0.901811
Target:  5'- --aUCACGcgcGCGcuGCgCGAGAAGGACc -3'
miRNA:   3'- ccaAGUGCuu-CGC--CGgGCUCUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.