miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25548 5' -54.9 NC_005337.1 + 110670 1.11 0.002658
Target:  5'- gGGUUCACGAAGCGGCCCGAGAAGGACc -3'
miRNA:   3'- -CCAAGUGCUUCGCCGGGCUCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 37291 0.76 0.407593
Target:  5'- aGUUCACguuGAAGCcGUCCGAGAAGGAg -3'
miRNA:   3'- cCAAGUG---CUUCGcCGGGCUCUUCCUg -5'
25548 5' -54.9 NC_005337.1 + 104287 0.76 0.443358
Target:  5'- aGUUCGCGcGGGCGGUCCGcGAGGGcGCg -3'
miRNA:   3'- cCAAGUGC-UUCGCCGGGCuCUUCC-UG- -5'
25548 5' -54.9 NC_005337.1 + 131987 0.75 0.452573
Target:  5'- uGUUCGCcAAGCuccuguucGGCCCGAGGAcGGACa -3'
miRNA:   3'- cCAAGUGcUUCG--------CCGGGCUCUU-CCUG- -5'
25548 5' -54.9 NC_005337.1 + 68305 0.74 0.529696
Target:  5'- cGUggACGc-GCGuGCCCGAGGAGGGCg -3'
miRNA:   3'- cCAagUGCuuCGC-CGGGCUCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 72990 0.73 0.590529
Target:  5'- cGUUCAUGAuggcgcGCGGCgCGAagaaGAAGGACa -3'
miRNA:   3'- cCAAGUGCUu-----CGCCGgGCU----CUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 125746 0.73 0.590529
Target:  5'- ----gGCGGAGCGcGCgugaCCGAGAAGGACc -3'
miRNA:   3'- ccaagUGCUUCGC-CG----GGCUCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 100458 0.73 0.611124
Target:  5'- uGUUCuCGuuccuGCGGUCCGuGGAGGACu -3'
miRNA:   3'- cCAAGuGCuu---CGCCGGGCuCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 42415 0.72 0.62145
Target:  5'- --cUCACGAAGCGGCUCaagcuGAcGGACa -3'
miRNA:   3'- ccaAGUGCUUCGCCGGGcu---CUuCCUG- -5'
25548 5' -54.9 NC_005337.1 + 115277 0.72 0.652445
Target:  5'- uGGUUCaACGAc-CGGCCCGAGcucgcgGAGGAg -3'
miRNA:   3'- -CCAAG-UGCUucGCCGGGCUC------UUCCUg -5'
25548 5' -54.9 NC_005337.1 + 17039 0.71 0.67304
Target:  5'- aGGcgCACGGcAGCGGCauCCGGucGGAGGGCu -3'
miRNA:   3'- -CCaaGUGCU-UCGCCG--GGCU--CUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 94835 0.71 0.67304
Target:  5'- cGUgcgCAcCGAGcGCGGCCCGAGc-GGGCg -3'
miRNA:   3'- cCAa--GU-GCUU-CGCCGGGCUCuuCCUG- -5'
25548 5' -54.9 NC_005337.1 + 65277 0.71 0.67304
Target:  5'- uGUUCACGGugacGGCGcucGCCaagGAGGAGGGCa -3'
miRNA:   3'- cCAAGUGCU----UCGC---CGGg--CUCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 84115 0.71 0.68329
Target:  5'- ----gGCGAAGCaGUCgGAGGAGGACu -3'
miRNA:   3'- ccaagUGCUUCGcCGGgCUCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 83331 0.71 0.68329
Target:  5'- gGGgcgcggCGCGAGGCGcCCCGGGAGGccGACu -3'
miRNA:   3'- -CCaa----GUGCUUCGCcGGGCUCUUC--CUG- -5'
25548 5' -54.9 NC_005337.1 + 31661 0.71 0.692479
Target:  5'- --gUCGCGGucgggguAGCGGUCCGGGAAGaACa -3'
miRNA:   3'- ccaAGUGCU-------UCGCCGGGCUCUUCcUG- -5'
25548 5' -54.9 NC_005337.1 + 74660 0.71 0.703654
Target:  5'- aGGUgaa-GAAGCGGCUCGGcaacgcGAAGGGCc -3'
miRNA:   3'- -CCAagugCUUCGCCGGGCU------CUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 53878 0.71 0.709718
Target:  5'- uGGUUCugcaagcaggcguCGggGCGGCCCcgcuggcggugGAGAcgcuGGACg -3'
miRNA:   3'- -CCAAGu------------GCuuCGCCGGG-----------CUCUu---CCUG- -5'
25548 5' -54.9 NC_005337.1 + 116428 0.7 0.733713
Target:  5'- -cUUCAaGAAGCucggcgGGUCCGAGAAGGAg -3'
miRNA:   3'- ccAAGUgCUUCG------CCGGGCUCUUCCUg -5'
25548 5' -54.9 NC_005337.1 + 50416 0.7 0.743566
Target:  5'- cGGUg-ACGGAGCGgcgggcgcuuccGCCCGGGAuucGGGCg -3'
miRNA:   3'- -CCAagUGCUUCGC------------CGGGCUCUu--CCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.