miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25548 5' -54.9 NC_005337.1 + 968 0.67 0.880839
Target:  5'- cGGggCugGAGcggcggggcuggcGCGGCgCGcGGAGGGCg -3'
miRNA:   3'- -CCaaGugCUU-------------CGCCGgGCuCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 968 0.67 0.880839
Target:  5'- cGGggCugGAGcggcggggcuggcGCGGCgCGcGGAGGGCg -3'
miRNA:   3'- -CCaaGugCUU-------------CGCCGgGCuCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 1168 0.69 0.781887
Target:  5'- ----gGCGGAGCGGCCCGcuAGgcGGuGCg -3'
miRNA:   3'- ccaagUGCUUCGCCGGGC--UCuuCC-UG- -5'
25548 5' -54.9 NC_005337.1 + 2096 0.66 0.93588
Target:  5'- cGGcgCGCGccGCGaGCCCGGucAGGcACg -3'
miRNA:   3'- -CCaaGUGCuuCGC-CGGGCUcuUCC-UG- -5'
25548 5' -54.9 NC_005337.1 + 9512 0.67 0.901811
Target:  5'- uGGccgUCACcauGCGGCCgGGGGAGG-Cu -3'
miRNA:   3'- -CCa--AGUGcuuCGCCGGgCUCUUCCuG- -5'
25548 5' -54.9 NC_005337.1 + 10686 0.68 0.866907
Target:  5'- gGGUUCuccuCGAAgGCGGCCagGAGcucGGGCu -3'
miRNA:   3'- -CCAAGu---GCUU-CGCCGGg-CUCuu-CCUG- -5'
25548 5' -54.9 NC_005337.1 + 17039 0.71 0.67304
Target:  5'- aGGcgCACGGcAGCGGCauCCGGucGGAGGGCu -3'
miRNA:   3'- -CCaaGUGCU-UCGCCG--GGCU--CUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 20658 0.67 0.908095
Target:  5'- cGGccucgCACGgcGCGGaCC-AGAGGGGCg -3'
miRNA:   3'- -CCaa---GUGCuuCGCCgGGcUCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 20785 0.67 0.874339
Target:  5'- -cUUCGCGGggacgGGCGuGCCgGAGcuGGACa -3'
miRNA:   3'- ccAAGUGCU-----UCGC-CGGgCUCuuCCUG- -5'
25548 5' -54.9 NC_005337.1 + 25580 0.66 0.914137
Target:  5'- aGGaaCACGGAGuCGGUgucgCCGuagacgcugcGGAAGGACa -3'
miRNA:   3'- -CCaaGUGCUUC-GCCG----GGC----------UCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 27913 0.67 0.888536
Target:  5'- aGGUUCugGggGCG-CgCGAucuGGACg -3'
miRNA:   3'- -CCAAGugCuuCGCcGgGCUcuuCCUG- -5'
25548 5' -54.9 NC_005337.1 + 31661 0.71 0.692479
Target:  5'- --gUCGCGGucgggguAGCGGUCCGGGAAGaACa -3'
miRNA:   3'- ccaAGUGCU-------UCGCCGGGCUCUUCcUG- -5'
25548 5' -54.9 NC_005337.1 + 32111 0.67 0.874339
Target:  5'- ----uGCGAGGCGGagauggaCGAGAAGGAg -3'
miRNA:   3'- ccaagUGCUUCGCCgg-----GCUCUUCCUg -5'
25548 5' -54.9 NC_005337.1 + 35942 0.69 0.791148
Target:  5'- aGUUCGC-AGGCaGCaCCGGGuAGGGACg -3'
miRNA:   3'- cCAAGUGcUUCGcCG-GGCUC-UUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 36302 0.67 0.895291
Target:  5'- cGGUgUCGCGGauGGCGcGCaCgGAGGAGGuCg -3'
miRNA:   3'- -CCA-AGUGCU--UCGC-CG-GgCUCUUCCuG- -5'
25548 5' -54.9 NC_005337.1 + 37291 0.76 0.407593
Target:  5'- aGUUCACguuGAAGCcGUCCGAGAAGGAg -3'
miRNA:   3'- cCAAGUG---CUUCGcCGGGCUCUUCCUg -5'
25548 5' -54.9 NC_005337.1 + 38700 0.69 0.800263
Target:  5'- uGGUgu-CGGcGGCGGCCCGucguccugacGggGGACa -3'
miRNA:   3'- -CCAaguGCU-UCGCCGGGCu---------CuuCCUG- -5'
25548 5' -54.9 NC_005337.1 + 42415 0.72 0.62145
Target:  5'- --cUCACGAAGCGGCUCaagcuGAcGGACa -3'
miRNA:   3'- ccaAGUGCUUCGCCGGGcu---CUuCCUG- -5'
25548 5' -54.9 NC_005337.1 + 45352 0.67 0.897927
Target:  5'- uGGggCGCGAGGUGGUgcucagccaggacuuCCu-GGAGGACg -3'
miRNA:   3'- -CCaaGUGCUUCGCCG---------------GGcuCUUCCUG- -5'
25548 5' -54.9 NC_005337.1 + 46672 0.68 0.866907
Target:  5'- --aUCGCGcagcagucgcccGAGCGGCgCCGGGAGGucGGCg -3'
miRNA:   3'- ccaAGUGC------------UUCGCCG-GGCUCUUC--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.