miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25549 3' -60.4 NC_005337.1 + 109073 1.06 0.001432
Target:  5'- gUUCGAGUCCCGCGCGAUGCCGCUGGAg -3'
miRNA:   3'- -AAGCUCAGGGCGCGCUACGGCGACCU- -5'
25549 3' -60.4 NC_005337.1 + 73894 0.75 0.220338
Target:  5'- aUCGAGgucugCCUGgGCagcgaGAUGCCGCUGGGg -3'
miRNA:   3'- aAGCUCa----GGGCgCG-----CUACGGCGACCU- -5'
25549 3' -60.4 NC_005337.1 + 17040 0.73 0.279245
Target:  5'- gUCGcGUUCCGCGCGGUcugcacguuCCGCUGGAu -3'
miRNA:   3'- aAGCuCAGGGCGCGCUAc--------GGCGACCU- -5'
25549 3' -60.4 NC_005337.1 + 22056 0.73 0.292434
Target:  5'- -cCGAGUUCCGCGCGGUGaagCGcCUGGc -3'
miRNA:   3'- aaGCUCAGGGCGCGCUACg--GC-GACCu -5'
25549 3' -60.4 NC_005337.1 + 94326 0.71 0.365624
Target:  5'- gUCGAGcgCCCGCGCGAggcgcccGCCGCg--- -3'
miRNA:   3'- aAGCUCa-GGGCGCGCUa------CGGCGaccu -5'
25549 3' -60.4 NC_005337.1 + 84942 0.71 0.381699
Target:  5'- aUCGAGUugCCCucCGCG-UGUCGCUGGAu -3'
miRNA:   3'- aAGCUCA--GGGc-GCGCuACGGCGACCU- -5'
25549 3' -60.4 NC_005337.1 + 122187 0.7 0.415232
Target:  5'- cUCGGGUCCaCGCGCGAgGgCG-UGGAc -3'
miRNA:   3'- aAGCUCAGG-GCGCGCUaCgGCgACCU- -5'
25549 3' -60.4 NC_005337.1 + 127606 0.7 0.450511
Target:  5'- -cCGAGUCgUGCuGUGGgugcacGCCGCUGGAu -3'
miRNA:   3'- aaGCUCAGgGCG-CGCUa-----CGGCGACCU- -5'
25549 3' -60.4 NC_005337.1 + 53895 0.7 0.459586
Target:  5'- gUCGGGgcggcCCCGCugGCGGUGgagaCGCUGGAc -3'
miRNA:   3'- aAGCUCa----GGGCG--CGCUACg---GCGACCU- -5'
25549 3' -60.4 NC_005337.1 + 43916 0.69 0.478021
Target:  5'- --aGAGg-CCGCGCGuaacgGCCGCUGGc -3'
miRNA:   3'- aagCUCagGGCGCGCua---CGGCGACCu -5'
25549 3' -60.4 NC_005337.1 + 42761 0.69 0.487375
Target:  5'- -gCGGGUCCCGCGCGuucGUG-UGCUcGGGc -3'
miRNA:   3'- aaGCUCAGGGCGCGC---UACgGCGA-CCU- -5'
25549 3' -60.4 NC_005337.1 + 120448 0.69 0.487375
Target:  5'- -cCGAGUCCCugcgggGCGCGcucgagcGCgCGCUGGAu -3'
miRNA:   3'- aaGCUCAGGG------CGCGCua-----CG-GCGACCU- -5'
25549 3' -60.4 NC_005337.1 + 73303 0.69 0.487375
Target:  5'- cUUCGAGUCCCaGCGCGuggGCgCGCg--- -3'
miRNA:   3'- -AAGCUCAGGG-CGCGCua-CG-GCGaccu -5'
25549 3' -60.4 NC_005337.1 + 101232 0.69 0.506334
Target:  5'- --gGAGgcgUCCGCGCGcGUGCucgCGCUGGAc -3'
miRNA:   3'- aagCUCa--GGGCGCGC-UACG---GCGACCU- -5'
25549 3' -60.4 NC_005337.1 + 75391 0.69 0.515931
Target:  5'- gUCGAcGUCuuggCCGCGCgGAUGCUGC-GGAc -3'
miRNA:   3'- aAGCU-CAG----GGCGCG-CUACGGCGaCCU- -5'
25549 3' -60.4 NC_005337.1 + 107936 0.68 0.525601
Target:  5'- --aGGG-CCCGCugauGCGGcUGCUGCUGGAc -3'
miRNA:   3'- aagCUCaGGGCG----CGCU-ACGGCGACCU- -5'
25549 3' -60.4 NC_005337.1 + 96316 0.68 0.534362
Target:  5'- -cCGGGaaggugaccugccUCCCGCugGCGgcGCUGCUGGAc -3'
miRNA:   3'- aaGCUC-------------AGGGCG--CGCuaCGGCGACCU- -5'
25549 3' -60.4 NC_005337.1 + 54869 0.68 0.535339
Target:  5'- aUCGAGaUgCCGCGCc--GCCGCgGGAg -3'
miRNA:   3'- aAGCUC-AgGGCGCGcuaCGGCGaCCU- -5'
25549 3' -60.4 NC_005337.1 + 64024 0.68 0.545139
Target:  5'- -gCGAGUCCaaCGCGCaGAUgGCCGCcuuccuccucaUGGAg -3'
miRNA:   3'- aaGCUCAGG--GCGCG-CUA-CGGCG-----------ACCU- -5'
25549 3' -60.4 NC_005337.1 + 69152 0.68 0.564906
Target:  5'- -gCGcGUCUCGCGCG-UGCUGCUGc- -3'
miRNA:   3'- aaGCuCAGGGCGCGCuACGGCGACcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.