miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25549 5' -54.2 NC_005337.1 + 48171 0.66 0.941458
Target:  5'- cCUC-GCgCGCGgagGCGCUgcuGCGGGAGCUg -3'
miRNA:   3'- cGAGuCG-GCGCa--CGUGG---UGUUCUUGA- -5'
25549 5' -54.2 NC_005337.1 + 86724 0.66 0.941458
Target:  5'- uGgUCAGUCGCGgcaucagGC-CCACGAGGucccGCUc -3'
miRNA:   3'- -CgAGUCGGCGCa------CGuGGUGUUCU----UGA- -5'
25549 5' -54.2 NC_005337.1 + 13613 0.66 0.941458
Target:  5'- cGC-CAGCCggGCGU-CGCCGCcgAGGGACa -3'
miRNA:   3'- -CGaGUCGG--CGCAcGUGGUG--UUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 84230 0.66 0.941458
Target:  5'- gGCgCGGCCuGCGgGCACUugGugaAGAGCa -3'
miRNA:   3'- -CGaGUCGG-CGCaCGUGGugU---UCUUGa -5'
25549 5' -54.2 NC_005337.1 + 22170 0.66 0.940982
Target:  5'- cGCUCcugcagaaggccgGGCC-CGUGCGgCACAGcGGGCUc -3'
miRNA:   3'- -CGAG-------------UCGGcGCACGUgGUGUU-CUUGA- -5'
25549 5' -54.2 NC_005337.1 + 89714 0.66 0.940022
Target:  5'- cGCggCGGCCGCGUcGUcacugucgcccuccGCCACGcgguagccgaGGAGCUc -3'
miRNA:   3'- -CGa-GUCGGCGCA-CG--------------UGGUGU----------UCUUGA- -5'
25549 5' -54.2 NC_005337.1 + 127959 0.66 0.936584
Target:  5'- cGCU-GGCCGCGcucaUGCGCUcCAAGAggGCg -3'
miRNA:   3'- -CGAgUCGGCGC----ACGUGGuGUUCU--UGa -5'
25549 5' -54.2 NC_005337.1 + 22767 0.66 0.936584
Target:  5'- gGCUCGGUaUGCGgcUGUACaACGAGGACUc -3'
miRNA:   3'- -CGAGUCG-GCGC--ACGUGgUGUUCUUGA- -5'
25549 5' -54.2 NC_005337.1 + 6160 0.66 0.936584
Target:  5'- cGCggCAGCCGC--GCACCACcAGuucGCUu -3'
miRNA:   3'- -CGa-GUCGGCGcaCGUGGUGuUCu--UGA- -5'
25549 5' -54.2 NC_005337.1 + 59317 0.66 0.936584
Target:  5'- cGCgUAGCCGCGgagccccaGCACCGCAuccGCg -3'
miRNA:   3'- -CGaGUCGGCGCa-------CGUGGUGUucuUGa -5'
25549 5' -54.2 NC_005337.1 + 50483 0.66 0.936584
Target:  5'- cGCaUCAGaCCGCGUcaaCAUCaaGCGGGAGCUg -3'
miRNA:   3'- -CG-AGUC-GGCGCAc--GUGG--UGUUCUUGA- -5'
25549 5' -54.2 NC_005337.1 + 131005 0.66 0.936584
Target:  5'- cGCUgcacgUGGCCGcCGcGCACCGCAAcGACa -3'
miRNA:   3'- -CGA-----GUCGGC-GCaCGUGGUGUUcUUGa -5'
25549 5' -54.2 NC_005337.1 + 37442 0.66 0.931459
Target:  5'- cGC-CAcGCCGCG-GCugCGCAcccgcagguccgAGAACa -3'
miRNA:   3'- -CGaGU-CGGCGCaCGugGUGU------------UCUUGa -5'
25549 5' -54.2 NC_005337.1 + 86000 0.66 0.931459
Target:  5'- cGCgggucCAGCCGCagGUGCGUCACGccgauGGAGCa -3'
miRNA:   3'- -CGa----GUCGGCG--CACGUGGUGU-----UCUUGa -5'
25549 5' -54.2 NC_005337.1 + 68609 0.66 0.931459
Target:  5'- uCUC-GCCGCuggGCACCACcucGAACUc -3'
miRNA:   3'- cGAGuCGGCGca-CGUGGUGuu-CUUGA- -5'
25549 5' -54.2 NC_005337.1 + 20769 0.66 0.931459
Target:  5'- ---gGGCCGCGgccacGCGCUucGCGGGGACg -3'
miRNA:   3'- cgagUCGGCGCa----CGUGG--UGUUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 36985 0.66 0.931459
Target:  5'- cGCUCAugaucuCCGCG-GUcuccaGCCGCGGGGACg -3'
miRNA:   3'- -CGAGUc-----GGCGCaCG-----UGGUGUUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 35832 0.66 0.930933
Target:  5'- cGCa-GGCCGaucccgacaaguuCGUGCGCUGCGGGGGCg -3'
miRNA:   3'- -CGagUCGGC-------------GCACGUGGUGUUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 99490 0.66 0.926082
Target:  5'- ---uGGCCGUGcgGCGCUACGcGGACUg -3'
miRNA:   3'- cgagUCGGCGCa-CGUGGUGUuCUUGA- -5'
25549 5' -54.2 NC_005337.1 + 112093 0.66 0.926082
Target:  5'- cGCUguGCCGCacggGCccgGCCuucuGCAGGAGCg -3'
miRNA:   3'- -CGAguCGGCGca--CG---UGG----UGUUCUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.