miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25549 5' -54.2 NC_005337.1 + 719 0.69 0.816693
Target:  5'- cGCccgCGGCCGCGggGUACgCggGCGAGAGCg -3'
miRNA:   3'- -CGa--GUCGGCGCa-CGUG-G--UGUUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 719 0.69 0.816693
Target:  5'- cGCccgCGGCCGCGggGUACgCggGCGAGAGCg -3'
miRNA:   3'- -CGa--GUCGGCGCa-CGUG-G--UGUUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 1094 0.7 0.770226
Target:  5'- gGCUaCAGCCgGCGcaGCGCCGCcgccGGGAGCa -3'
miRNA:   3'- -CGA-GUCGG-CGCa-CGUGGUG----UUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 1094 0.7 0.770226
Target:  5'- gGCUaCAGCCgGCGcaGCGCCGCcgccGGGAGCa -3'
miRNA:   3'- -CGA-GUCGG-CGCa-CGUGGUG----UUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 2222 0.72 0.647833
Target:  5'- ---gGGCCGCGaGCGCgCGCAGGAACc -3'
miRNA:   3'- cgagUCGGCGCaCGUG-GUGUUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 2863 0.69 0.825492
Target:  5'- cGCggAGCCGC--GCGCCAgCGGGAACa -3'
miRNA:   3'- -CGagUCGGCGcaCGUGGU-GUUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 3388 0.72 0.647833
Target:  5'- gGCgagaAGCgCGCGUGCGCCAUcugguaguAGGAGCg -3'
miRNA:   3'- -CGag--UCG-GCGCACGUGGUG--------UUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 5589 0.67 0.90844
Target:  5'- cGC-CAGCgCGCGUGCcCgGCgGGGGACg -3'
miRNA:   3'- -CGaGUCG-GCGCACGuGgUG-UUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 5717 0.67 0.881456
Target:  5'- aCUCgaugaaGGCCGCGUGUauGCCGCGcucGGGCUc -3'
miRNA:   3'- cGAG------UCGGCGCACG--UGGUGUu--CUUGA- -5'
25549 5' -54.2 NC_005337.1 + 6160 0.66 0.936584
Target:  5'- cGCggCAGCCGC--GCACCACcAGuucGCUu -3'
miRNA:   3'- -CGa-GUCGGCGcaCGUGGUGuUCu--UGA- -5'
25549 5' -54.2 NC_005337.1 + 6664 0.68 0.866544
Target:  5'- --cCAGCgGCGUGCAcCCACAGcacGACUc -3'
miRNA:   3'- cgaGUCGgCGCACGU-GGUGUUc--UUGA- -5'
25549 5' -54.2 NC_005337.1 + 11738 0.69 0.825492
Target:  5'- gGCUgCAGCgCGCGU-CGCCGCGccAGGGCc -3'
miRNA:   3'- -CGA-GUCG-GCGCAcGUGGUGU--UCUUGa -5'
25549 5' -54.2 NC_005337.1 + 12267 0.7 0.760504
Target:  5'- cGUcgCGGCCGgGUcGCACCccgcgcGCAGGAGCUc -3'
miRNA:   3'- -CGa-GUCGGCgCA-CGUGG------UGUUCUUGA- -5'
25549 5' -54.2 NC_005337.1 + 13613 0.66 0.941458
Target:  5'- cGC-CAGCCggGCGU-CGCCGCcgAGGGACa -3'
miRNA:   3'- -CGaGUCGG--CGCAcGUGGUG--UUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 14737 0.7 0.750662
Target:  5'- cGC-CAGCCGC-UGCACCGaaucgccgAAGAGCg -3'
miRNA:   3'- -CGaGUCGGCGcACGUGGUg-------UUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 16164 0.71 0.730659
Target:  5'- cGCUCGcGCCGCGUuugcuccaccacGCGCCG-GAGAGCc -3'
miRNA:   3'- -CGAGU-CGGCGCA------------CGUGGUgUUCUUGa -5'
25549 5' -54.2 NC_005337.1 + 17596 0.67 0.902059
Target:  5'- gGCUCGcCCGCGggcggcugcaGCACCAUGuAGGACUc -3'
miRNA:   3'- -CGAGUcGGCGCa---------CGUGGUGU-UCUUGA- -5'
25549 5' -54.2 NC_005337.1 + 18795 0.67 0.902059
Target:  5'- --aCGGCCccguGCGUGCACCgguGCGAGuACg -3'
miRNA:   3'- cgaGUCGG----CGCACGUGG---UGUUCuUGa -5'
25549 5' -54.2 NC_005337.1 + 19273 0.67 0.902059
Target:  5'- cGCgCGGCUGCGUGUGgaGCGuAGGACUa -3'
miRNA:   3'- -CGaGUCGGCGCACGUggUGU-UCUUGA- -5'
25549 5' -54.2 NC_005337.1 + 19947 0.77 0.391269
Target:  5'- uGCUCAGCgaagaggcucCGCaccgGCGCCGCGAGAGCUc -3'
miRNA:   3'- -CGAGUCG----------GCGca--CGUGGUGUUCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.