miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25550 3' -53.4 NC_005337.1 + 69424 0.66 0.959029
Target:  5'- gUGCGCcuuccgcucgUCCGGCGCCAGcUCgcgcgcgcacaugggCAGGUACc -3'
miRNA:   3'- -ACGCG----------AGGCUGUGGUUcAG---------------GUUCAUG- -5'
25550 3' -53.4 NC_005337.1 + 50532 0.66 0.957504
Target:  5'- aGCG-UCCGggaccucaGCGCCGAGUCCAGcaACc -3'
miRNA:   3'- aCGCgAGGC--------UGUGGUUCAGGUUcaUG- -5'
25550 3' -53.4 NC_005337.1 + 75425 0.66 0.957504
Target:  5'- cGCGCgagCG-CGCgAAGUCCAGGUc- -3'
miRNA:   3'- aCGCGag-GCuGUGgUUCAGGUUCAug -5'
25550 3' -53.4 NC_005337.1 + 98539 0.66 0.957504
Target:  5'- aGCGCguaCGACACCAccacgccGUCCAcgcaccGGUAg -3'
miRNA:   3'- aCGCGag-GCUGUGGUu------CAGGU------UCAUg -5'
25550 3' -53.4 NC_005337.1 + 132806 0.66 0.957504
Target:  5'- gGCGCgCgGACGCCAAcggauccgcgacGUUCAcGUGCa -3'
miRNA:   3'- aCGCGaGgCUGUGGUU------------CAGGUuCAUG- -5'
25550 3' -53.4 NC_005337.1 + 68546 0.66 0.957504
Target:  5'- cGCGCUagugaCGGCGCCGGGcgcgccccaCCGcGUGCg -3'
miRNA:   3'- aCGCGAg----GCUGUGGUUCa--------GGUuCAUG- -5'
25550 3' -53.4 NC_005337.1 + 80852 0.66 0.957504
Target:  5'- uUGUGCgucaCCGucaccacgcuCACCAGGUCCccGUACu -3'
miRNA:   3'- -ACGCGa---GGCu---------GUGGUUCAGGuuCAUG- -5'
25550 3' -53.4 NC_005337.1 + 11601 0.66 0.957504
Target:  5'- aUGCGgUgCaGCACCAGGUCCucguccagcGUGCg -3'
miRNA:   3'- -ACGCgAgGcUGUGGUUCAGGuu-------CAUG- -5'
25550 3' -53.4 NC_005337.1 + 56454 0.66 0.957504
Target:  5'- gGCGCgguggCCGAgACCAAgGUCUAcgGGcGCg -3'
miRNA:   3'- aCGCGa----GGCUgUGGUU-CAGGU--UCaUG- -5'
25550 3' -53.4 NC_005337.1 + 89862 0.66 0.957504
Target:  5'- gGCGCUCCGGCAgacCCAcgaucauGUCCGc---- -3'
miRNA:   3'- aCGCGAGGCUGU---GGUu------CAGGUucaug -5'
25550 3' -53.4 NC_005337.1 + 97481 0.66 0.956336
Target:  5'- cGaCGCggCUGACGCCcagcgggucgcacgAGGUCCGcGUGCa -3'
miRNA:   3'- aC-GCGa-GGCUGUGG--------------UUCAGGUuCAUG- -5'
25550 3' -53.4 NC_005337.1 + 91897 0.66 0.953525
Target:  5'- gGCGcCUCCGGguCGCCG-GUCaCGAcGUGCg -3'
miRNA:   3'- aCGC-GAGGCU--GUGGUuCAG-GUU-CAUG- -5'
25550 3' -53.4 NC_005337.1 + 127888 0.66 0.953525
Target:  5'- cGCGCggcgCCGGCgagcgcgugcggGCCGAG-CC-GGUGCu -3'
miRNA:   3'- aCGCGa---GGCUG------------UGGUUCaGGuUCAUG- -5'
25550 3' -53.4 NC_005337.1 + 4771 0.66 0.953525
Target:  5'- aGCGCgucgaUGACGCgCGGGUCC--GUGCa -3'
miRNA:   3'- aCGCGag---GCUGUG-GUUCAGGuuCAUG- -5'
25550 3' -53.4 NC_005337.1 + 6322 0.66 0.953525
Target:  5'- gGCGCggaucUCCGccucgcacucgcGCACCGcGUCCGcGUACu -3'
miRNA:   3'- aCGCG-----AGGC------------UGUGGUuCAGGUuCAUG- -5'
25550 3' -53.4 NC_005337.1 + 65211 0.66 0.953525
Target:  5'- gGaCGC-CgGGCACCGcGUCCAGGUc- -3'
miRNA:   3'- aC-GCGaGgCUGUGGUuCAGGUUCAug -5'
25550 3' -53.4 NC_005337.1 + 52419 0.66 0.953525
Target:  5'- cGCGaCUUCGACGCCGccuucgCCGAGgcCa -3'
miRNA:   3'- aCGC-GAGGCUGUGGUuca---GGUUCauG- -5'
25550 3' -53.4 NC_005337.1 + 26745 0.66 0.953525
Target:  5'- gGUGCUCCGGuCGCCGcgaaacguGGUCgucGUGCg -3'
miRNA:   3'- aCGCGAGGCU-GUGGU--------UCAGguuCAUG- -5'
25550 3' -53.4 NC_005337.1 + 109783 0.66 0.953525
Target:  5'- aGCGCgucgCCGcGCACCAgguaguAGUCgAGGUcguGCa -3'
miRNA:   3'- aCGCGa---GGC-UGUGGU------UCAGgUUCA---UG- -5'
25550 3' -53.4 NC_005337.1 + 11746 0.66 0.949302
Target:  5'- cGCGCgucgCCG-CGCCAGGgCCAGcaGCg -3'
miRNA:   3'- aCGCGa---GGCuGUGGUUCaGGUUcaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.