miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25550 5' -59.2 NC_005337.1 + 60883 0.66 0.736951
Target:  5'- -uGCGgGUGcgGGCGCgCCGAGUAc-- -3'
miRNA:   3'- ccCGCgCACuaCCGCG-GGUUCGUcuu -5'
25550 5' -59.2 NC_005337.1 + 2383 0.66 0.736951
Target:  5'- cGGGUGCGUcGAcGacaCGCgCAGGCGGAAg -3'
miRNA:   3'- -CCCGCGCA-CUaCc--GCGgGUUCGUCUU- -5'
25550 5' -59.2 NC_005337.1 + 133076 0.66 0.736951
Target:  5'- cGGCGCc-GGUGGcCGCCUggauGCAGGAg -3'
miRNA:   3'- cCCGCGcaCUACC-GCGGGuu--CGUCUU- -5'
25550 5' -59.2 NC_005337.1 + 18646 0.66 0.731068
Target:  5'- uGGUGUGUGAucgccaggucggcggUGGCguacccgcgcaGCCCGGGCAGc- -3'
miRNA:   3'- cCCGCGCACU---------------ACCG-----------CGGGUUCGUCuu -5'
25550 5' -59.2 NC_005337.1 + 30637 0.66 0.727129
Target:  5'- -uGCGCGcagccgagGAUGGCGCgCGGcGCGGAGu -3'
miRNA:   3'- ccCGCGCa-------CUACCGCGgGUU-CGUCUU- -5'
25550 5' -59.2 NC_005337.1 + 49598 0.66 0.727129
Target:  5'- cGGCGaccaGUGGgaGGCGCCCGcGGCAcaGAAg -3'
miRNA:   3'- cCCGCg---CACUa-CCGCGGGU-UCGU--CUU- -5'
25550 5' -59.2 NC_005337.1 + 56981 0.66 0.717223
Target:  5'- cGGCGCGUGAUGGaCGaCgUgcGCgAGAAg -3'
miRNA:   3'- cCCGCGCACUACC-GC-GgGuuCG-UCUU- -5'
25550 5' -59.2 NC_005337.1 + 118760 0.66 0.717223
Target:  5'- cGGGUGCGUGAcaugcuugcUGGCgacgcuGUCCGcAGCAGc- -3'
miRNA:   3'- -CCCGCGCACU---------ACCG------CGGGU-UCGUCuu -5'
25550 5' -59.2 NC_005337.1 + 58730 0.66 0.707245
Target:  5'- uGGGCGCGccggcGcgGGUGCaCCgGAGCAGc- -3'
miRNA:   3'- -CCCGCGCa----CuaCCGCG-GG-UUCGUCuu -5'
25550 5' -59.2 NC_005337.1 + 118103 0.66 0.707245
Target:  5'- cGGCGCGUGGUGGagcaaacgcgGCgCGAGCGc-- -3'
miRNA:   3'- cCCGCGCACUACCg---------CGgGUUCGUcuu -5'
25550 5' -59.2 NC_005337.1 + 114565 0.66 0.707245
Target:  5'- aGGCGCGgccgcaGAUGGCGCC--GGCGc-- -3'
miRNA:   3'- cCCGCGCa-----CUACCGCGGguUCGUcuu -5'
25550 5' -59.2 NC_005337.1 + 92193 0.66 0.697204
Target:  5'- -aGCGCGUGAccgUGGCGCac-GGUAGGGa -3'
miRNA:   3'- ccCGCGCACU---ACCGCGgguUCGUCUU- -5'
25550 5' -59.2 NC_005337.1 + 93250 0.66 0.697204
Target:  5'- cGGaGCGgcUGGUGGCggGCCuCAAGCGGGAc -3'
miRNA:   3'- cCCgCGC--ACUACCG--CGG-GUUCGUCUU- -5'
25550 5' -59.2 NC_005337.1 + 8741 0.66 0.697204
Target:  5'- uGGCGCG-GAUgucGGCGCCguaccgcaCGAGCAGc- -3'
miRNA:   3'- cCCGCGCaCUA---CCGCGG--------GUUCGUCuu -5'
25550 5' -59.2 NC_005337.1 + 60224 0.66 0.687108
Target:  5'- uGGGCGCGgggGcUGGgGCUgGGGuCGGAGc -3'
miRNA:   3'- -CCCGCGCa--CuACCgCGGgUUC-GUCUU- -5'
25550 5' -59.2 NC_005337.1 + 68827 0.66 0.687108
Target:  5'- cGGCGCucGGUGGaguGCCgGAGCAGGc -3'
miRNA:   3'- cCCGCGcaCUACCg--CGGgUUCGUCUu -5'
25550 5' -59.2 NC_005337.1 + 96152 0.67 0.676966
Target:  5'- cGGaaCGCGUaGAUGGCgaagaggaGCCCGAGCAcGAu -3'
miRNA:   3'- cCC--GCGCA-CUACCG--------CGGGUUCGU-CUu -5'
25550 5' -59.2 NC_005337.1 + 72602 0.67 0.666787
Target:  5'- cGGGUcgcgcgcggGCGUGGUGGUGCCCGc-CAcGAAc -3'
miRNA:   3'- -CCCG---------CGCACUACCGCGGGUucGU-CUU- -5'
25550 5' -59.2 NC_005337.1 + 30080 0.67 0.666787
Target:  5'- cGGGCGCagGUGcaGGCGUCCuccagcucGCAGAGg -3'
miRNA:   3'- -CCCGCG--CACuaCCGCGGGuu------CGUCUU- -5'
25550 5' -59.2 NC_005337.1 + 96102 0.67 0.666787
Target:  5'- cGGGCGCGgcgGAggacauGCGgCCGcGCAGGAu -3'
miRNA:   3'- -CCCGCGCa--CUac----CGCgGGUuCGUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.