miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25551 3' -55.3 NC_005337.1 + 62505 0.66 0.928963
Target:  5'- uGUGCUugguGUCgUCCGCGAUGCGcucGCC-Ca -3'
miRNA:   3'- cCAUGA----CAG-AGGUGCUGCGCa--CGGaG- -5'
25551 3' -55.3 NC_005337.1 + 22855 0.66 0.928963
Target:  5'- cGUGCUGga-CCGCGGCGCGc-UCUCg -3'
miRNA:   3'- cCAUGACagaGGUGCUGCGCacGGAG- -5'
25551 3' -55.3 NC_005337.1 + 42213 0.66 0.928963
Target:  5'- cGGUACagccgGUCgUCCGCGAguuCGCGcacgGCCa- -3'
miRNA:   3'- -CCAUGa----CAG-AGGUGCU---GCGCa---CGGag -5'
25551 3' -55.3 NC_005337.1 + 14045 0.66 0.925761
Target:  5'- gGGUACcG-CUCCAUGGCGaucuugagggacagGUGCUUCu -3'
miRNA:   3'- -CCAUGaCaGAGGUGCUGCg-------------CACGGAG- -5'
25551 3' -55.3 NC_005337.1 + 97144 0.66 0.923578
Target:  5'- cGUGCccuucgucGUCUCCuACGACG-GcGCCUCg -3'
miRNA:   3'- cCAUGa-------CAGAGG-UGCUGCgCaCGGAG- -5'
25551 3' -55.3 NC_005337.1 + 65517 0.66 0.923578
Target:  5'- uGGaGCUGgugaaCCugGuGCGCGUGCgCUCg -3'
miRNA:   3'- -CCaUGACaga--GGugC-UGCGCACG-GAG- -5'
25551 3' -55.3 NC_005337.1 + 100996 0.66 0.917952
Target:  5'- --gGCUcGUCgCCACGcuCGCGgGCCUCu -3'
miRNA:   3'- ccaUGA-CAGaGGUGCu-GCGCaCGGAG- -5'
25551 3' -55.3 NC_005337.1 + 100738 0.66 0.917952
Target:  5'- cGUGCacGUCggCgACGACGCGUGCa-- -3'
miRNA:   3'- cCAUGa-CAGa-GgUGCUGCGCACGgag -5'
25551 3' -55.3 NC_005337.1 + 120925 0.66 0.917952
Target:  5'- --cGC-GUgUCC-CGGCGCGUGCC-Cg -3'
miRNA:   3'- ccaUGaCAgAGGuGCUGCGCACGGaG- -5'
25551 3' -55.3 NC_005337.1 + 115593 0.66 0.912084
Target:  5'- -cUGCUGUCUCCGacCGAC-CG-GcCCUCg -3'
miRNA:   3'- ccAUGACAGAGGU--GCUGcGCaC-GGAG- -5'
25551 3' -55.3 NC_005337.1 + 32356 0.66 0.912084
Target:  5'- aGG-ACgGUCUCCAgGACcaGCcgGUGCUUCa -3'
miRNA:   3'- -CCaUGaCAGAGGUgCUG--CG--CACGGAG- -5'
25551 3' -55.3 NC_005337.1 + 131435 0.66 0.912084
Target:  5'- cGG-ACUccGUCUCCGCGGaggcCGCGcucgGCCUg -3'
miRNA:   3'- -CCaUGA--CAGAGGUGCU----GCGCa---CGGAg -5'
25551 3' -55.3 NC_005337.1 + 24150 0.66 0.911484
Target:  5'- aGGUGCgcaacgcGUCUCCcucGCaguaaugGACGCGcaGCCUCg -3'
miRNA:   3'- -CCAUGa------CAGAGG---UG-------CUGCGCa-CGGAG- -5'
25551 3' -55.3 NC_005337.1 + 14050 0.66 0.905975
Target:  5'- --cACUG-CUCgGCGAUGCuGUccGCCUCg -3'
miRNA:   3'- ccaUGACaGAGgUGCUGCG-CA--CGGAG- -5'
25551 3' -55.3 NC_005337.1 + 69048 0.66 0.905975
Target:  5'- gGGUACgccggGUacgaCCugGACGCgGUGCC-Cg -3'
miRNA:   3'- -CCAUGa----CAga--GGugCUGCG-CACGGaG- -5'
25551 3' -55.3 NC_005337.1 + 37925 0.66 0.899629
Target:  5'- aGGUAUUGccucacuuauUCUgCCGCuGC-CGUGCCUCg -3'
miRNA:   3'- -CCAUGAC----------AGA-GGUGcUGcGCACGGAG- -5'
25551 3' -55.3 NC_005337.1 + 29011 0.67 0.893048
Target:  5'- cGUACUcgagcGcCUCgACGAgGCGgGCCUCg -3'
miRNA:   3'- cCAUGA-----CaGAGgUGCUgCGCaCGGAG- -5'
25551 3' -55.3 NC_005337.1 + 94257 0.67 0.893048
Target:  5'- --cGCUagcaUCUCCACcGCGCGgaugGCCUCc -3'
miRNA:   3'- ccaUGAc---AGAGGUGcUGCGCa---CGGAG- -5'
25551 3' -55.3 NC_005337.1 + 42757 0.67 0.893048
Target:  5'- cGGUGCggGUC-CCGCGcguuCGUGUGCUc- -3'
miRNA:   3'- -CCAUGa-CAGaGGUGCu---GCGCACGGag -5'
25551 3' -55.3 NC_005337.1 + 42392 0.67 0.87193
Target:  5'- cGGagGCg----CCGCGGCGCGcgGCCUCg -3'
miRNA:   3'- -CCa-UGacagaGGUGCUGCGCa-CGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.