miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25551 3' -55.3 NC_005337.1 + 77325 0.67 0.864448
Target:  5'- uGGUACagGUC-CCGCGGCGagauGgccGCCUCc -3'
miRNA:   3'- -CCAUGa-CAGaGGUGCUGCg---Ca--CGGAG- -5'
25551 3' -55.3 NC_005337.1 + 21895 0.67 0.856753
Target:  5'- cGGcGCUc-CUCCAgGACGCGcGCUUCa -3'
miRNA:   3'- -CCaUGAcaGAGGUgCUGCGCaCGGAG- -5'
25551 3' -55.3 NC_005337.1 + 60439 0.68 0.840754
Target:  5'- aGGUACUcgcgcaugaccGcCUCCGCGACGU-UGCCg- -3'
miRNA:   3'- -CCAUGA-----------CaGAGGUGCUGCGcACGGag -5'
25551 3' -55.3 NC_005337.1 + 64682 0.68 0.832462
Target:  5'- aGGgGCUcaGUCcCCugGACGUcgcgguGUGCCUCu -3'
miRNA:   3'- -CCaUGA--CAGaGGugCUGCG------CACGGAG- -5'
25551 3' -55.3 NC_005337.1 + 110114 0.68 0.823985
Target:  5'- cGGUAUUGUCguaggaagCCAUGGCuGCGUGUg-- -3'
miRNA:   3'- -CCAUGACAGa-------GGUGCUG-CGCACGgag -5'
25551 3' -55.3 NC_005337.1 + 99431 0.68 0.815332
Target:  5'- cGUGCUGag-CCGCGGCGUGgGCCa- -3'
miRNA:   3'- cCAUGACagaGGUGCUGCGCaCGGag -5'
25551 3' -55.3 NC_005337.1 + 18995 0.69 0.80651
Target:  5'- --aGCUG-CUCgACGACGCGUucGCCa- -3'
miRNA:   3'- ccaUGACaGAGgUGCUGCGCA--CGGag -5'
25551 3' -55.3 NC_005337.1 + 105156 0.69 0.80651
Target:  5'- uGGUGCUGcuggcgCUgCACGGCGUGgucgaccccUGCUUCg -3'
miRNA:   3'- -CCAUGACa-----GAgGUGCUGCGC---------ACGGAG- -5'
25551 3' -55.3 NC_005337.1 + 125077 0.69 0.797527
Target:  5'- cGGUuCUGggUCCGCGAcCGCGUGgCCa- -3'
miRNA:   3'- -CCAuGACagAGGUGCU-GCGCAC-GGag -5'
25551 3' -55.3 NC_005337.1 + 110061 0.69 0.779117
Target:  5'- cGGggGCaG-CUCCAccuCGACGCGcGCCUCg -3'
miRNA:   3'- -CCa-UGaCaGAGGU---GCUGCGCaCGGAG- -5'
25551 3' -55.3 NC_005337.1 + 7258 0.69 0.779117
Target:  5'- --aGCaugGUCUCCACGACGCGcaGCUg- -3'
miRNA:   3'- ccaUGa--CAGAGGUGCUGCGCa-CGGag -5'
25551 3' -55.3 NC_005337.1 + 94021 0.7 0.739787
Target:  5'- -cUACUGUCUCgugguggCGCGGCGCGgcgcgGCCg- -3'
miRNA:   3'- ccAUGACAGAG-------GUGCUGCGCa----CGGag -5'
25551 3' -55.3 NC_005337.1 + 73514 0.7 0.720979
Target:  5'- cGGUGCUGggcacCCGCGAgGCG-GCaCUCg -3'
miRNA:   3'- -CCAUGACaga--GGUGCUgCGCaCG-GAG- -5'
25551 3' -55.3 NC_005337.1 + 63501 0.71 0.679527
Target:  5'- aGGcGCUGUcCUCCGugcucacCGACGUGcagGCCUCg -3'
miRNA:   3'- -CCaUGACA-GAGGU-------GCUGCGCa--CGGAG- -5'
25551 3' -55.3 NC_005337.1 + 29786 0.71 0.660053
Target:  5'- uGG-ACUGUCgCCGCuGCGCGUGCUcCg -3'
miRNA:   3'- -CCaUGACAGaGGUGcUGCGCACGGaG- -5'
25551 3' -55.3 NC_005337.1 + 9643 0.71 0.649768
Target:  5'- cGUACcucGUCUCCGgaGGCGCGcaaUGCCUCc -3'
miRNA:   3'- cCAUGa--CAGAGGUg-CUGCGC---ACGGAG- -5'
25551 3' -55.3 NC_005337.1 + 77131 0.72 0.59829
Target:  5'- gGGUGCUGcgCUCCACGGCGUccagGCUg- -3'
miRNA:   3'- -CCAUGACa-GAGGUGCUGCGca--CGGag -5'
25551 3' -55.3 NC_005337.1 + 14711 0.73 0.567643
Target:  5'- gGGUAcCUGcUCUCCACGACGCccaucGCCa- -3'
miRNA:   3'- -CCAU-GAC-AGAGGUGCUGCGca---CGGag -5'
25551 3' -55.3 NC_005337.1 + 74956 0.73 0.557511
Target:  5'- cGGUGCUGgggCUCCGCGgcuACGCGauagcgGCCg- -3'
miRNA:   3'- -CCAUGACa--GAGGUGC---UGCGCa-----CGGag -5'
25551 3' -55.3 NC_005337.1 + 104764 0.74 0.507749
Target:  5'- --gACUGcaugaUCUCgCACGGCGCG-GCCUCa -3'
miRNA:   3'- ccaUGAC-----AGAG-GUGCUGCGCaCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.