miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25551 5' -55.1 NC_005337.1 + 38820 0.66 0.935707
Target:  5'- cGGGGCGCUACGccGCGcUGGAcGCGu-- -3'
miRNA:   3'- cCCUCGUGAUGC--CGC-ACCUcUGCuuc -5'
25551 5' -55.1 NC_005337.1 + 108122 0.66 0.935212
Target:  5'- cGGAGaCGCUGgucggcguggUGGUGUccgacaaccgucuGGAGGCGGAGa -3'
miRNA:   3'- cCCUC-GUGAU----------GCCGCA-------------CCUCUGCUUC- -5'
25551 5' -55.1 NC_005337.1 + 66060 0.66 0.932702
Target:  5'- gGGGAGCgaccgcaucgcggacGCggccGCGGCGgcGGAGGCGc-- -3'
miRNA:   3'- -CCCUCG---------------UGa---UGCCGCa-CCUCUGCuuc -5'
25551 5' -55.1 NC_005337.1 + 100265 0.66 0.930651
Target:  5'- cGGGAGCACcuaccGCGcGCGcaaGAGGCGGu- -3'
miRNA:   3'- -CCCUCGUGa----UGC-CGCac-CUCUGCUuc -5'
25551 5' -55.1 NC_005337.1 + 54110 0.66 0.925352
Target:  5'- -cGGGCGCUGCuaCGUGGAGcGCGAc- -3'
miRNA:   3'- ccCUCGUGAUGccGCACCUC-UGCUuc -5'
25551 5' -55.1 NC_005337.1 + 93789 0.66 0.925352
Target:  5'- cGGAcGCGCUACGaCGUGGucGCGGc- -3'
miRNA:   3'- cCCU-CGUGAUGCcGCACCucUGCUuc -5'
25551 5' -55.1 NC_005337.1 + 10613 0.66 0.925352
Target:  5'- gGGGAGCG--GCGGCGccaGGACGAc- -3'
miRNA:   3'- -CCCUCGUgaUGCCGCaccUCUGCUuc -5'
25551 5' -55.1 NC_005337.1 + 93282 0.66 0.919812
Target:  5'- cGGGGGUGCguCGGCGccUGGuGGCGGu- -3'
miRNA:   3'- -CCCUCGUGauGCCGC--ACCuCUGCUuc -5'
25551 5' -55.1 NC_005337.1 + 105333 0.66 0.919812
Target:  5'- --cAGCACgUGCGGCGgcgGGAGGCu--- -3'
miRNA:   3'- cccUCGUG-AUGCCGCa--CCUCUGcuuc -5'
25551 5' -55.1 NC_005337.1 + 93095 0.66 0.914031
Target:  5'- cGGAGCucauCGaCGUGGAGAuCGggGa -3'
miRNA:   3'- cCCUCGugauGCcGCACCUCU-GCuuC- -5'
25551 5' -55.1 NC_005337.1 + 59529 0.66 0.914031
Target:  5'- aGGAGaACaGCGGCGUGGucAgGAAGu -3'
miRNA:   3'- cCCUCgUGaUGCCGCACCucUgCUUC- -5'
25551 5' -55.1 NC_005337.1 + 11320 0.66 0.914031
Target:  5'- uGGuGUugUugGCGGCGUcgucgcggccGGGGAUGGAGa -3'
miRNA:   3'- cCCuCGugA--UGCCGCA----------CCUCUGCUUC- -5'
25551 5' -55.1 NC_005337.1 + 131616 0.66 0.914031
Target:  5'- ---cGCACU-CaGCGUGGAGGCGGc- -3'
miRNA:   3'- cccuCGUGAuGcCGCACCUCUGCUuc -5'
25551 5' -55.1 NC_005337.1 + 101253 0.66 0.914031
Target:  5'- ---cGCGCUggACGGCGcGGAcGCGAAGa -3'
miRNA:   3'- cccuCGUGA--UGCCGCaCCUcUGCUUC- -5'
25551 5' -55.1 NC_005337.1 + 77170 0.66 0.914031
Target:  5'- cGGGGUACUGcCGGCGccacccgcGGAuGGCGAAc -3'
miRNA:   3'- cCCUCGUGAU-GCCGCa-------CCU-CUGCUUc -5'
25551 5' -55.1 NC_005337.1 + 44530 0.66 0.90801
Target:  5'- cGGAGCuccucgGCUACcGCGUGGcggaGGGCGAc- -3'
miRNA:   3'- cCCUCG------UGAUGcCGCACC----UCUGCUuc -5'
25551 5' -55.1 NC_005337.1 + 132308 0.67 0.895256
Target:  5'- cGGcGuGCACgGCGGCGgaGGGGGCGcuGg -3'
miRNA:   3'- -CC-CuCGUGaUGCCGCa-CCUCUGCuuC- -5'
25551 5' -55.1 NC_005337.1 + 114752 0.67 0.895256
Target:  5'- cGGGcuccGGCACU-CGGUGUcuccucGGAGACcguGAAGg -3'
miRNA:   3'- -CCC----UCGUGAuGCCGCA------CCUCUG---CUUC- -5'
25551 5' -55.1 NC_005337.1 + 68350 0.67 0.888529
Target:  5'- cGGAGgACgGCGcggucgcgaucGCGUGGAG-CGAGGg -3'
miRNA:   3'- cCCUCgUGaUGC-----------CGCACCUCuGCUUC- -5'
25551 5' -55.1 NC_005337.1 + 94900 0.67 0.888529
Target:  5'- aGGcGCACUGCGccacgGUGGcGACGAAGa -3'
miRNA:   3'- cCCuCGUGAUGCcg---CACCuCUGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.