miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25552 3' -60.5 NC_005337.1 + 74544 0.67 0.65783
Target:  5'- cG-CGCUCCgCCGcGCGGCG-CGUgAUg -3'
miRNA:   3'- aCaGCGAGGgGGC-CGCUGCaGCAgUG- -5'
25552 3' -60.5 NC_005337.1 + 44306 0.67 0.647913
Target:  5'- cGcCGCUCCCCCGaGCG-CGUgcugCGgccgCGCc -3'
miRNA:   3'- aCaGCGAGGGGGC-CGCuGCA----GCa---GUG- -5'
25552 3' -60.5 NC_005337.1 + 25099 0.67 0.647913
Target:  5'- ---aGCUCCgCCCGcGCGGCG-CGgcgCGCg -3'
miRNA:   3'- acagCGAGG-GGGC-CGCUGCaGCa--GUG- -5'
25552 3' -60.5 NC_005337.1 + 60158 0.67 0.637984
Target:  5'- cGUCGUaCCaCCCGGUcACGUgGaUCACg -3'
miRNA:   3'- aCAGCGaGG-GGGCCGcUGCAgC-AGUG- -5'
25552 3' -60.5 NC_005337.1 + 12929 0.67 0.627058
Target:  5'- cGUCGCcgccgaacUCCagguaCCGGCgGACGUccucgacCGUCACg -3'
miRNA:   3'- aCAGCG--------AGGg----GGCCG-CUGCA-------GCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 40815 0.67 0.618121
Target:  5'- --aCGUUCCCgCCGGCGgGCGUCuucCGCa -3'
miRNA:   3'- acaGCGAGGG-GGCCGC-UGCAGca-GUG- -5'
25552 3' -60.5 NC_005337.1 + 33509 0.68 0.608201
Target:  5'- gGUCGaagauCUCCgCCGuGCGccggcugcacGCGUCGUCGCc -3'
miRNA:   3'- aCAGC-----GAGGgGGC-CGC----------UGCAGCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 59168 0.68 0.598297
Target:  5'- cGUUcCUCCCCCaGGCcguGCGUCGgggCACc -3'
miRNA:   3'- aCAGcGAGGGGG-CCGc--UGCAGCa--GUG- -5'
25552 3' -60.5 NC_005337.1 + 68228 0.68 0.588417
Target:  5'- gGUCGCUCCCCUGG-GGC-UCcucCACg -3'
miRNA:   3'- aCAGCGAGGGGGCCgCUGcAGca-GUG- -5'
25552 3' -60.5 NC_005337.1 + 3343 0.68 0.588417
Target:  5'- aUGcCGUagCCCCCGGUGGCcaugugguacauGUCGUCGu -3'
miRNA:   3'- -ACaGCGa-GGGGGCCGCUG------------CAGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 93806 0.68 0.578567
Target:  5'- gGUCGCggCUCCaguuucgucuGCGGCGUCGUCAa -3'
miRNA:   3'- aCAGCGa-GGGGgc--------CGCUGCAGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 67724 0.68 0.578567
Target:  5'- cGUCGUccUCCgggaCCGGCGGCG-CGgcgCGCa -3'
miRNA:   3'- aCAGCG--AGGg---GGCCGCUGCaGCa--GUG- -5'
25552 3' -60.5 NC_005337.1 + 59646 0.68 0.558981
Target:  5'- cGgCGC-CCCgCCGGgGAacaucaCGUCGUCGCg -3'
miRNA:   3'- aCaGCGaGGG-GGCCgCU------GCAGCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 130568 0.69 0.553141
Target:  5'- aUGUCGC-CCCCUGGCGcCGaggacaagaagccgCGUCGg -3'
miRNA:   3'- -ACAGCGaGGGGGCCGCuGCa-------------GCAGUg -5'
25552 3' -60.5 NC_005337.1 + 38852 0.69 0.549257
Target:  5'- -aUCGCUgCCCCGcGUGACGcUCGUgcgggCGCa -3'
miRNA:   3'- acAGCGAgGGGGC-CGCUGC-AGCA-----GUG- -5'
25552 3' -60.5 NC_005337.1 + 79093 0.69 0.549257
Target:  5'- --aCGCgcaugCCCaCCGGC-ACGUCGUCGa -3'
miRNA:   3'- acaGCGa----GGG-GGCCGcUGCAGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 110625 0.69 0.539586
Target:  5'- gGUCGaggUCCCuCCGGaCGACGcucUCGUCGg -3'
miRNA:   3'- aCAGCg--AGGG-GGCC-GCUGC---AGCAGUg -5'
25552 3' -60.5 NC_005337.1 + 65783 0.69 0.520424
Target:  5'- cUGUcCGCgCCCCCGGUG-CGcacCGUCAUg -3'
miRNA:   3'- -ACA-GCGaGGGGGCCGCuGCa--GCAGUG- -5'
25552 3' -60.5 NC_005337.1 + 4181 0.69 0.510943
Target:  5'- cGUCGCUgaCCCCGGCcucaACGgccugCGUCAg -3'
miRNA:   3'- aCAGCGAg-GGGGCCGc---UGCa----GCAGUg -5'
25552 3' -60.5 NC_005337.1 + 10081 0.69 0.510943
Target:  5'- aGUC-CUCCUCCGaCGACGUgGUgGCg -3'
miRNA:   3'- aCAGcGAGGGGGCcGCUGCAgCAgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.