miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25552 5' -57.3 NC_005337.1 + 83969 0.67 0.778518
Target:  5'- -cAGGGCaGCGgCGGCgCgGGCGGGCAc -3'
miRNA:   3'- guUCCUGcUGCaGUCG-GaCCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 34414 0.67 0.769173
Target:  5'- -cAGGGCaGGCccgaccGCCUGGCGGGCGg -3'
miRNA:   3'- guUCCUG-CUGcagu--CGGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 93622 0.67 0.758753
Target:  5'- aGAGGGCGccccacuGCGUCGGgaCCUGGauGACGa -3'
miRNA:   3'- gUUCCUGC-------UGCAGUC--GGACCgcCUGU- -5'
25552 5' -57.3 NC_005337.1 + 42970 0.68 0.750126
Target:  5'- aCGAGGACGGCGcggCgacgGGCCagacguugaacuUGGCGGAgAg -3'
miRNA:   3'- -GUUCCUGCUGCa--G----UCGG------------ACCGCCUgU- -5'
25552 5' -57.3 NC_005337.1 + 111316 0.68 0.749162
Target:  5'- uCGAGGACGagccccaGCGUgccCAGCUUGGCGucCAg -3'
miRNA:   3'- -GUUCCUGC-------UGCA---GUCGGACCGCcuGU- -5'
25552 5' -57.3 NC_005337.1 + 1001 0.68 0.740443
Target:  5'- gGAGGGCgGGCGUC-GCCUGGaGGcCGu -3'
miRNA:   3'- gUUCCUG-CUGCAGuCGGACCgCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 1001 0.68 0.740443
Target:  5'- gGAGGGCgGGCGUC-GCCUGGaGGcCGu -3'
miRNA:   3'- gUUCCUG-CUGCAGuCGGACCgCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 85390 0.68 0.730665
Target:  5'- cCAGGuGCGugGUCuGGCCgccgGGCGGGg- -3'
miRNA:   3'- -GUUCcUGCugCAG-UCGGa---CCGCCUgu -5'
25552 5' -57.3 NC_005337.1 + 31501 0.68 0.730665
Target:  5'- --cGGGCGugGUCAGCac-GUGGAUg -3'
miRNA:   3'- guuCCUGCugCAGUCGgacCGCCUGu -5'
25552 5' -57.3 NC_005337.1 + 122708 0.68 0.714847
Target:  5'- cCGAGGugGugGUCcGCgUGcugucgcacgugcccGCGGACGa -3'
miRNA:   3'- -GUUCCugCugCAGuCGgAC---------------CGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 68272 0.68 0.710863
Target:  5'- uCGAGGAcuuCGACGUCugcGGCCggccGGCGG-CGu -3'
miRNA:   3'- -GUUCCU---GCUGCAG---UCGGa---CCGCCuGU- -5'
25552 5' -57.3 NC_005337.1 + 44367 0.68 0.704868
Target:  5'- -uGGGGCGACGccccgCcgcccaccgggauggGGCCugUGGCGGACAu -3'
miRNA:   3'- guUCCUGCUGCa----G---------------UCGG--ACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 119891 0.69 0.680683
Target:  5'- --cGGACugcugGACGUCAucaaggaccaCCUGGCGGGCAu -3'
miRNA:   3'- guuCCUG-----CUGCAGUc---------GGACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 11956 0.69 0.660348
Target:  5'- gAGGGACGcgcauaucGCGUCAGC--GGgGGACAg -3'
miRNA:   3'- gUUCCUGC--------UGCAGUCGgaCCgCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 71728 0.69 0.650142
Target:  5'- -cAGGugcgcgacgacGCGACgGUCAGCCUgucGGUGGGCGa -3'
miRNA:   3'- guUCC-----------UGCUG-CAGUCGGA---CCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 25707 0.69 0.650142
Target:  5'- gGAGGAgCGAcuCGUCAGCCUucUGGACAa -3'
miRNA:   3'- gUUCCU-GCU--GCAGUCGGAccGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 32099 0.69 0.650142
Target:  5'- gCGGGGAUGACGU--GCgaGGCGGAg- -3'
miRNA:   3'- -GUUCCUGCUGCAguCGgaCCGCCUgu -5'
25552 5' -57.3 NC_005337.1 + 114170 0.69 0.639922
Target:  5'- gGAGGACG-CGcUCucGCUgaUGGCGGACGg -3'
miRNA:   3'- gUUCCUGCuGC-AGu-CGG--ACCGCCUGU- -5'
25552 5' -57.3 NC_005337.1 + 82616 0.69 0.639922
Target:  5'- cCAGGGGCGACGgcgGGCgCUGGCGaccGCGg -3'
miRNA:   3'- -GUUCCUGCUGCag-UCG-GACCGCc--UGU- -5'
25552 5' -57.3 NC_005337.1 + 13283 0.7 0.619472
Target:  5'- cCGAGGGCGAUGcgCAGgagGGCGGGCu -3'
miRNA:   3'- -GUUCCUGCUGCa-GUCggaCCGCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.