miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25553 3' -57.2 NC_005337.1 + 133524 0.66 0.889596
Target:  5'- cCGcCGUCGAGGcCGcGGGcgcCGCGCu- -3'
miRNA:   3'- -GCaGCAGCUCCuGCaCCCa--GCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 133524 0.66 0.889596
Target:  5'- cCGcCGUCGAGGcCGcGGGcgcCGCGCu- -3'
miRNA:   3'- -GCaGCAGCUCCuGCaCCCa--GCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 8135 0.66 0.875901
Target:  5'- ---aGUCGGGGACGccGGGcauggccgcgCGCACGGc -3'
miRNA:   3'- gcagCAGCUCCUGCa-CCCa---------GCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 37008 0.66 0.875901
Target:  5'- aGcCG-CGGGGACGUgGGGUCGaa-GAg -3'
miRNA:   3'- gCaGCaGCUCCUGCA-CCCAGCgugCU- -5'
25553 3' -57.2 NC_005337.1 + 17915 0.66 0.875901
Target:  5'- uGUCGaagUUGAGGACGcGGGUCaugGCcCGGc -3'
miRNA:   3'- gCAGC---AGCUCCUGCaCCCAG---CGuGCU- -5'
25553 3' -57.2 NC_005337.1 + 71167 0.66 0.868738
Target:  5'- uGUCGUCGcuGGGCuc-GGUgGCACGGg -3'
miRNA:   3'- gCAGCAGCu-CCUGcacCCAgCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 64271 0.66 0.853804
Target:  5'- uCGUCGUCGGGcGACugcaUGaGGU-GCACGGc -3'
miRNA:   3'- -GCAGCAGCUC-CUGc---AC-CCAgCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 128498 0.67 0.846045
Target:  5'- gCGUgCGUCGcGuACGU-GGUCGCGCGGc -3'
miRNA:   3'- -GCA-GCAGCuCcUGCAcCCAGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 122702 0.67 0.846045
Target:  5'- uGcCGccCGAGGugGUGGuccgcgugcuGUCGCACGu -3'
miRNA:   3'- gCaGCa-GCUCCugCACC----------CAGCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 23028 0.67 0.846045
Target:  5'- cCG-CGUCGAGGACGUGuccucGUucgugaCGCACGc -3'
miRNA:   3'- -GCaGCAGCUCCUGCACc----CA------GCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 41937 0.67 0.838099
Target:  5'- uCGUCGUCGGacggcuGGACGgug--CGCGCGAg -3'
miRNA:   3'- -GCAGCAGCU------CCUGCacccaGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 41581 0.67 0.833245
Target:  5'- uCGUCGaagacggcccccagCGAGGGCGU-GGUCGUgGCGAa -3'
miRNA:   3'- -GCAGCa-------------GCUCCUGCAcCCAGCG-UGCU- -5'
25553 3' -57.2 NC_005337.1 + 23863 0.67 0.821676
Target:  5'- uCGUCGUCGAGGGCaUGGc---CACGGu -3'
miRNA:   3'- -GCAGCAGCUCCUGcACCcagcGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 79675 0.67 0.813212
Target:  5'- aCGUCGUucggCGAGGugccCGUGGaGaggucguucagcUCGCGCGAg -3'
miRNA:   3'- -GCAGCA----GCUCCu---GCACC-C------------AGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 79583 0.67 0.813212
Target:  5'- gCGUUGUCacguccGugGUguagGGGUCGCGCGAg -3'
miRNA:   3'- -GCAGCAGcuc---CugCA----CCCAGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 29763 0.68 0.768687
Target:  5'- gGUCGUCcaaccGGGCGUccGGGU-GCGCGAg -3'
miRNA:   3'- gCAGCAGcu---CCUGCA--CCCAgCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 47779 0.68 0.768687
Target:  5'- gCGUacuUCGAGGGCG-GGGUgcugCGCACGu -3'
miRNA:   3'- -GCAgc-AGCUCCUGCaCCCA----GCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 62367 0.68 0.759398
Target:  5'- uGUCGUCGAaGGCGgugcgcaGGUCGCugGu -3'
miRNA:   3'- gCAGCAGCUcCUGCac-----CCAGCGugCu -5'
25553 3' -57.2 NC_005337.1 + 77762 0.68 0.759398
Target:  5'- cCGUCuuggcgcgGUCGcGGACGUGGG-C-CACGAa -3'
miRNA:   3'- -GCAG--------CAGCuCCUGCACCCaGcGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 105083 0.68 0.759398
Target:  5'- -cUCGUCuGAGGACugaaccucUGcGGUCGCGCGGc -3'
miRNA:   3'- gcAGCAG-CUCCUGc-------AC-CCAGCGUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.