miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25553 3' -57.2 NC_005337.1 + 107499 1.09 0.002691
Target:  5'- cCGUCGUCGAGGACGUGGGUCGCACGAc -3'
miRNA:   3'- -GCAGCAGCUCCUGCACCCAGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 62373 0.75 0.380435
Target:  5'- cCGUCGUCGAGGACGc-GG-CGgACGAg -3'
miRNA:   3'- -GCAGCAGCUCCUGCacCCaGCgUGCU- -5'
25553 3' -57.2 NC_005337.1 + 92399 0.75 0.396836
Target:  5'- gCGaCGUCGGGGACGUgcugGGGcUCGCGCa- -3'
miRNA:   3'- -GCaGCAGCUCCUGCA----CCC-AGCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 7048 0.74 0.422273
Target:  5'- aCGUCGgggCGGGcGGCG-GGGUUGCGCGc -3'
miRNA:   3'- -GCAGCa--GCUC-CUGCaCCCAGCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 24851 0.74 0.457663
Target:  5'- gCGUgcUCGAGGACGU-GGUCGCGCa- -3'
miRNA:   3'- -GCAgcAGCUCCUGCAcCCAGCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 67948 0.73 0.523134
Target:  5'- cCGUCGcCGAaGACGaUGGGcUCGCugGAc -3'
miRNA:   3'- -GCAGCaGCUcCUGC-ACCC-AGCGugCU- -5'
25553 3' -57.2 NC_005337.1 + 86451 0.72 0.581937
Target:  5'- gGUCGUCgcaGAGGccgGCGUcgaagcgcgagGGGUCGCACGu -3'
miRNA:   3'- gCAGCAG---CUCC---UGCA-----------CCCAGCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 17013 0.7 0.65198
Target:  5'- -cUCGUCGGGGucUGcGGGcCGCGCGAa -3'
miRNA:   3'- gcAGCAGCUCCu-GCaCCCaGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 118933 0.7 0.68192
Target:  5'- gCGUCGcgCGGGcGcaGCGUGcGUCGCGCGAu -3'
miRNA:   3'- -GCAGCa-GCUC-C--UGCACcCAGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 3417 0.69 0.740504
Target:  5'- ---aGUUGAGGGcCGUcGGGUCGCAgcCGAg -3'
miRNA:   3'- gcagCAGCUCCU-GCA-CCCAGCGU--GCU- -5'
25553 3' -57.2 NC_005337.1 + 81542 0.69 0.740504
Target:  5'- aCGUCGcacaugcuccUCGAGGACauGUacGGGUCGUACu- -3'
miRNA:   3'- -GCAGC----------AGCUCCUG--CA--CCCAGCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 6037 0.69 0.750001
Target:  5'- aGUUGUCGcGGGCGUGGauGUcCGCGCc- -3'
miRNA:   3'- gCAGCAGCuCCUGCACC--CA-GCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 105083 0.68 0.759398
Target:  5'- -cUCGUCuGAGGACugaaccucUGcGGUCGCGCGGc -3'
miRNA:   3'- gcAGCAG-CUCCUGc-------AC-CCAGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 62367 0.68 0.759398
Target:  5'- uGUCGUCGAaGGCGgugcgcaGGUCGCugGu -3'
miRNA:   3'- gCAGCAGCUcCUGCac-----CCAGCGugCu -5'
25553 3' -57.2 NC_005337.1 + 77762 0.68 0.759398
Target:  5'- cCGUCuuggcgcgGUCGcGGACGUGGG-C-CACGAa -3'
miRNA:   3'- -GCAG--------CAGCuCCUGCACCCaGcGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 47779 0.68 0.768687
Target:  5'- gCGUacuUCGAGGGCG-GGGUgcugCGCACGu -3'
miRNA:   3'- -GCAgc-AGCUCCUGCaCCCA----GCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 29763 0.68 0.768687
Target:  5'- gGUCGUCcaaccGGGCGUccGGGU-GCGCGAg -3'
miRNA:   3'- gCAGCAGcu---CCUGCA--CCCAgCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 79675 0.67 0.813212
Target:  5'- aCGUCGUucggCGAGGugccCGUGGaGaggucguucagcUCGCGCGAg -3'
miRNA:   3'- -GCAGCA----GCUCCu---GCACC-C------------AGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 79583 0.67 0.813212
Target:  5'- gCGUUGUCacguccGugGUguagGGGUCGCGCGAg -3'
miRNA:   3'- -GCAGCAGcuc---CugCA----CCCAGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 23863 0.67 0.821676
Target:  5'- uCGUCGUCGAGGGCaUGGc---CACGGu -3'
miRNA:   3'- -GCAGCAGCUCCUGcACCcagcGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.