Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 79583 | 0.67 | 0.813212 |
Target: 5'- gCGUUGUCacguccGugGUguagGGGUCGCGCGAg -3' miRNA: 3'- -GCAGCAGcuc---CugCA----CCCAGCGUGCU- -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 79675 | 0.67 | 0.813212 |
Target: 5'- aCGUCGUucggCGAGGugccCGUGGaGaggucguucagcUCGCGCGAg -3' miRNA: 3'- -GCAGCA----GCUCCu---GCACC-C------------AGCGUGCU- -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 81542 | 0.69 | 0.740504 |
Target: 5'- aCGUCGcacaugcuccUCGAGGACauGUacGGGUCGUACu- -3' miRNA: 3'- -GCAGC----------AGCUCCUG--CA--CCCAGCGUGcu -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 86451 | 0.72 | 0.581937 |
Target: 5'- gGUCGUCgcaGAGGccgGCGUcgaagcgcgagGGGUCGCACGu -3' miRNA: 3'- gCAGCAG---CUCC---UGCA-----------CCCAGCGUGCu -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 92399 | 0.75 | 0.396836 |
Target: 5'- gCGaCGUCGGGGACGUgcugGGGcUCGCGCa- -3' miRNA: 3'- -GCaGCAGCUCCUGCA----CCC-AGCGUGcu -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 105083 | 0.68 | 0.759398 |
Target: 5'- -cUCGUCuGAGGACugaaccucUGcGGUCGCGCGGc -3' miRNA: 3'- gcAGCAG-CUCCUGc-------AC-CCAGCGUGCU- -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 107499 | 1.09 | 0.002691 |
Target: 5'- cCGUCGUCGAGGACGUGGGUCGCACGAc -3' miRNA: 3'- -GCAGCAGCUCCUGCACCCAGCGUGCU- -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 118933 | 0.7 | 0.68192 |
Target: 5'- gCGUCGcgCGGGcGcaGCGUGcGUCGCGCGAu -3' miRNA: 3'- -GCAGCa-GCUC-C--UGCACcCAGCGUGCU- -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 122702 | 0.67 | 0.846045 |
Target: 5'- uGcCGccCGAGGugGUGGuccgcgugcuGUCGCACGu -3' miRNA: 3'- gCaGCa-GCUCCugCACC----------CAGCGUGCu -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 128498 | 0.67 | 0.846045 |
Target: 5'- gCGUgCGUCGcGuACGU-GGUCGCGCGGc -3' miRNA: 3'- -GCA-GCAGCuCcUGCAcCCAGCGUGCU- -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 133524 | 0.66 | 0.889596 |
Target: 5'- cCGcCGUCGAGGcCGcGGGcgcCGCGCu- -3' miRNA: 3'- -GCaGCAGCUCCuGCaCCCa--GCGUGcu -5' |
|||||||
25553 | 3' | -57.2 | NC_005337.1 | + | 133524 | 0.66 | 0.889596 |
Target: 5'- cCGcCGUCGAGGcCGcGGGcgcCGCGCu- -3' miRNA: 3'- -GCaGCAGCUCCuGCaCCCa--GCGUGcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home