miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25553 3' -57.2 NC_005337.1 + 7048 0.74 0.422273
Target:  5'- aCGUCGgggCGGGcGGCG-GGGUUGCGCGc -3'
miRNA:   3'- -GCAGCa--GCUC-CUGCaCCCAGCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 133524 0.66 0.889596
Target:  5'- cCGcCGUCGAGGcCGcGGGcgcCGCGCu- -3'
miRNA:   3'- -GCaGCAGCUCCuGCaCCCa--GCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 37008 0.66 0.875901
Target:  5'- aGcCG-CGGGGACGUgGGGUCGaa-GAg -3'
miRNA:   3'- gCaGCaGCUCCUGCA-CCCAGCgugCU- -5'
25553 3' -57.2 NC_005337.1 + 17915 0.66 0.875901
Target:  5'- uGUCGaagUUGAGGACGcGGGUCaugGCcCGGc -3'
miRNA:   3'- gCAGC---AGCUCCUGCaCCCAG---CGuGCU- -5'
25553 3' -57.2 NC_005337.1 + 128498 0.67 0.846045
Target:  5'- gCGUgCGUCGcGuACGU-GGUCGCGCGGc -3'
miRNA:   3'- -GCA-GCAGCuCcUGCAcCCAGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 122702 0.67 0.846045
Target:  5'- uGcCGccCGAGGugGUGGuccgcgugcuGUCGCACGu -3'
miRNA:   3'- gCaGCa-GCUCCugCACC----------CAGCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 23028 0.67 0.846045
Target:  5'- cCG-CGUCGAGGACGUGuccucGUucgugaCGCACGc -3'
miRNA:   3'- -GCaGCAGCUCCUGCACc----CA------GCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 79675 0.67 0.813212
Target:  5'- aCGUCGUucggCGAGGugccCGUGGaGaggucguucagcUCGCGCGAg -3'
miRNA:   3'- -GCAGCA----GCUCCu---GCACC-C------------AGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 47779 0.68 0.768687
Target:  5'- gCGUacuUCGAGGGCG-GGGUgcugCGCACGu -3'
miRNA:   3'- -GCAgc-AGCUCCUGCaCCCA----GCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 17013 0.7 0.65198
Target:  5'- -cUCGUCGGGGucUGcGGGcCGCGCGAa -3'
miRNA:   3'- gcAGCAGCUCCu-GCaCCCaGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 3417 0.69 0.740504
Target:  5'- ---aGUUGAGGGcCGUcGGGUCGCAgcCGAg -3'
miRNA:   3'- gcagCAGCUCCU-GCA-CCCAGCGU--GCU- -5'
25553 3' -57.2 NC_005337.1 + 81542 0.69 0.740504
Target:  5'- aCGUCGcacaugcuccUCGAGGACauGUacGGGUCGUACu- -3'
miRNA:   3'- -GCAGC----------AGCUCCUG--CA--CCCAGCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 62367 0.68 0.759398
Target:  5'- uGUCGUCGAaGGCGgugcgcaGGUCGCugGu -3'
miRNA:   3'- gCAGCAGCUcCUGCac-----CCAGCGugCu -5'
25553 3' -57.2 NC_005337.1 + 77762 0.68 0.759398
Target:  5'- cCGUCuuggcgcgGUCGcGGACGUGGG-C-CACGAa -3'
miRNA:   3'- -GCAG--------CAGCuCCUGCACCCaGcGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 105083 0.68 0.759398
Target:  5'- -cUCGUCuGAGGACugaaccucUGcGGUCGCGCGGc -3'
miRNA:   3'- gcAGCAG-CUCCUGc-------AC-CCAGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 133524 0.66 0.889596
Target:  5'- cCGcCGUCGAGGcCGcGGGcgcCGCGCu- -3'
miRNA:   3'- -GCaGCAGCUCCuGCaCCCa--GCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 62373 0.75 0.380435
Target:  5'- cCGUCGUCGAGGACGc-GG-CGgACGAg -3'
miRNA:   3'- -GCAGCAGCUCCUGCacCCaGCgUGCU- -5'
25553 3' -57.2 NC_005337.1 + 92399 0.75 0.396836
Target:  5'- gCGaCGUCGGGGACGUgcugGGGcUCGCGCa- -3'
miRNA:   3'- -GCaGCAGCUCCUGCA----CCC-AGCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 24851 0.74 0.457663
Target:  5'- gCGUgcUCGAGGACGU-GGUCGCGCa- -3'
miRNA:   3'- -GCAgcAGCUCCUGCAcCCAGCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 67948 0.73 0.523134
Target:  5'- cCGUCGcCGAaGACGaUGGGcUCGCugGAc -3'
miRNA:   3'- -GCAGCaGCUcCUGC-ACCC-AGCGugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.