miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25553 3' -57.2 NC_005337.1 + 71167 0.66 0.868738
Target:  5'- uGUCGUCGcuGGGCuc-GGUgGCACGGg -3'
miRNA:   3'- gCAGCAGCu-CCUGcacCCAgCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 8135 0.66 0.875901
Target:  5'- ---aGUCGGGGACGccGGGcauggccgcgCGCACGGc -3'
miRNA:   3'- gcagCAGCUCCUGCa-CCCa---------GCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 29763 0.68 0.768687
Target:  5'- gGUCGUCcaaccGGGCGUccGGGU-GCGCGAg -3'
miRNA:   3'- gCAGCAGcu---CCUGCA--CCCAgCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 6037 0.69 0.750001
Target:  5'- aGUUGUCGcGGGCGUGGauGUcCGCGCc- -3'
miRNA:   3'- gCAGCAGCuCCUGCACC--CA-GCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 118933 0.7 0.68192
Target:  5'- gCGUCGcgCGGGcGcaGCGUGcGUCGCGCGAu -3'
miRNA:   3'- -GCAGCa-GCUC-C--UGCACcCAGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 86451 0.72 0.581937
Target:  5'- gGUCGUCgcaGAGGccgGCGUcgaagcgcgagGGGUCGCACGu -3'
miRNA:   3'- gCAGCAG---CUCC---UGCA-----------CCCAGCGUGCu -5'
25553 3' -57.2 NC_005337.1 + 67948 0.73 0.523134
Target:  5'- cCGUCGcCGAaGACGaUGGGcUCGCugGAc -3'
miRNA:   3'- -GCAGCaGCUcCUGC-ACCC-AGCGugCU- -5'
25553 3' -57.2 NC_005337.1 + 24851 0.74 0.457663
Target:  5'- gCGUgcUCGAGGACGU-GGUCGCGCa- -3'
miRNA:   3'- -GCAgcAGCUCCUGCAcCCAGCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 92399 0.75 0.396836
Target:  5'- gCGaCGUCGGGGACGUgcugGGGcUCGCGCa- -3'
miRNA:   3'- -GCaGCAGCUCCUGCA----CCC-AGCGUGcu -5'
25553 3' -57.2 NC_005337.1 + 62373 0.75 0.380435
Target:  5'- cCGUCGUCGAGGACGc-GG-CGgACGAg -3'
miRNA:   3'- -GCAGCAGCUCCUGCacCCaGCgUGCU- -5'
25553 3' -57.2 NC_005337.1 + 107499 1.09 0.002691
Target:  5'- cCGUCGUCGAGGACGUGGGUCGCACGAc -3'
miRNA:   3'- -GCAGCAGCUCCUGCACCCAGCGUGCU- -5'
25553 3' -57.2 NC_005337.1 + 133524 0.66 0.889596
Target:  5'- cCGcCGUCGAGGcCGcGGGcgcCGCGCu- -3'
miRNA:   3'- -GCaGCAGCUCCuGCaCCCa--GCGUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.