miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25553 5' -59.2 NC_005337.1 + 91893 0.66 0.735198
Target:  5'- --cCGCGGCGccuCCGGGuCGCCGGuCAc -3'
miRNA:   3'- aaaGCGCCGCu--GGCCUcGUGGCU-GUu -5'
25553 5' -59.2 NC_005337.1 + 866 0.66 0.735198
Target:  5'- --gCGCGggcGCGGCCGGGcggaagagcGCGCCGAgCAGg -3'
miRNA:   3'- aaaGCGC---CGCUGGCCU---------CGUGGCU-GUU- -5'
25553 5' -59.2 NC_005337.1 + 866 0.66 0.735198
Target:  5'- --gCGCGggcGCGGCCGGGcggaagagcGCGCCGAgCAGg -3'
miRNA:   3'- aaaGCGC---CGCUGGCCU---------CGUGGCU-GUU- -5'
25553 5' -59.2 NC_005337.1 + 71109 0.66 0.734218
Target:  5'- ---gGCGGCGGgcucagcacguccUCGGgcggcGGCACCGGCAAc -3'
miRNA:   3'- aaagCGCCGCU-------------GGCC-----UCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 47936 0.66 0.725353
Target:  5'- -gUUGCGGaggaGGCCGGccugacgcuGGCgACCGACGg -3'
miRNA:   3'- aaAGCGCCg---CUGGCC---------UCG-UGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 118498 0.66 0.725353
Target:  5'- ---gGCGGUGACCGugcGGGUgACCGGCGu -3'
miRNA:   3'- aaagCGCCGCUGGC---CUCG-UGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 95772 0.66 0.725353
Target:  5'- -aUCGCGGCGACgucguCGGccAGC-UCGGCGAc -3'
miRNA:   3'- aaAGCGCCGCUG-----GCC--UCGuGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 25275 0.66 0.725353
Target:  5'- --aCGCGGCG-CUGGAguucgcGCGCaCGGCGGg -3'
miRNA:   3'- aaaGCGCCGCuGGCCU------CGUG-GCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 98516 0.66 0.724364
Target:  5'- --cCGCGGCaaGGCCGGGGgGagcccgcCCGACGg -3'
miRNA:   3'- aaaGCGCCG--CUGGCCUCgU-------GGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 990 0.66 0.715427
Target:  5'- --gCGCGGCG-CgCGGAGgGCgGGCGu -3'
miRNA:   3'- aaaGCGCCGCuG-GCCUCgUGgCUGUu -5'
25553 5' -59.2 NC_005337.1 + 112690 0.66 0.715427
Target:  5'- ---gGCGGCcuACCGcacaGGCACCGGCAAg -3'
miRNA:   3'- aaagCGCCGc-UGGCc---UCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 42376 0.66 0.715427
Target:  5'- -gUCGUgaccGGCGAcCCGGAgGCGCCG-CGg -3'
miRNA:   3'- aaAGCG----CCGCU-GGCCU-CGUGGCuGUu -5'
25553 5' -59.2 NC_005337.1 + 57278 0.66 0.715427
Target:  5'- --gCGCGG-GGCCGGcGCGCgCGGCu- -3'
miRNA:   3'- aaaGCGCCgCUGGCCuCGUG-GCUGuu -5'
25553 5' -59.2 NC_005337.1 + 990 0.66 0.715427
Target:  5'- --gCGCGGCG-CgCGGAGgGCgGGCGu -3'
miRNA:   3'- aaaGCGCCGCuG-GCCUCgUGgCUGUu -5'
25553 5' -59.2 NC_005337.1 + 125096 0.66 0.715427
Target:  5'- --gCGUGGCcaagcaccuGACCGGGGUcuCCGGCAu -3'
miRNA:   3'- aaaGCGCCG---------CUGGCCUCGu-GGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 66631 0.66 0.715427
Target:  5'- cUUUCG-GGCGGgCGGugggaguggugcGGCGCCGACu- -3'
miRNA:   3'- -AAAGCgCCGCUgGCC------------UCGUGGCUGuu -5'
25553 5' -59.2 NC_005337.1 + 52491 0.66 0.709436
Target:  5'- -cUCGuCGGCGAgcugguguuccugaaCCGGcuGUACCGGCAc -3'
miRNA:   3'- aaAGC-GCCGCU---------------GGCCu-CGUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 98058 0.66 0.705429
Target:  5'- --gCGCGccGCGGCCGGcGCAaaaaaCGACGAa -3'
miRNA:   3'- aaaGCGC--CGCUGGCCuCGUg----GCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 44276 0.66 0.705429
Target:  5'- --cUGCuGGaCGACgucaccgGGAGCACCGACGAg -3'
miRNA:   3'- aaaGCG-CC-GCUGg------CCUCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 3273 0.66 0.69537
Target:  5'- --gCGCGGCGGCCacGuGCAgCGGCGu -3'
miRNA:   3'- aaaGCGCCGCUGGc-CuCGUgGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.