miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25553 5' -59.2 NC_005337.1 + 3273 0.66 0.69537
Target:  5'- --gCGCGGCGGCCacGuGCAgCGGCGu -3'
miRNA:   3'- aaaGCGCCGCUGGc-CuCGUgGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 68561 0.66 0.69537
Target:  5'- cUUUCGCcauGGCGcggaGCuCGGccAGCACCGACGc -3'
miRNA:   3'- -AAAGCG---CCGC----UG-GCC--UCGUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 6898 0.66 0.685258
Target:  5'- -gUCGCGcGCGcGCgGGuccGCGCCGGCGc -3'
miRNA:   3'- aaAGCGC-CGC-UGgCCu--CGUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 99532 0.66 0.685258
Target:  5'- --aCGCGGC--CCGGuGCGCCGcCGAc -3'
miRNA:   3'- aaaGCGCCGcuGGCCuCGUGGCuGUU- -5'
25553 5' -59.2 NC_005337.1 + 52491 0.66 0.709436
Target:  5'- -cUCGuCGGCGAgcugguguuccugaaCCGGcuGUACCGGCAc -3'
miRNA:   3'- aaAGC-GCCGCU---------------GGCCu-CGUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 21397 0.66 0.685258
Target:  5'- -aUCuCGGCGGCCGcGGCAUCGuCGAc -3'
miRNA:   3'- aaAGcGCCGCUGGCcUCGUGGCuGUU- -5'
25553 5' -59.2 NC_005337.1 + 112690 0.66 0.715427
Target:  5'- ---gGCGGCcuACCGcacaGGCACCGGCAAg -3'
miRNA:   3'- aaagCGCCGc-UGGCc---UCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 990 0.66 0.715427
Target:  5'- --gCGCGGCG-CgCGGAGgGCgGGCGu -3'
miRNA:   3'- aaaGCGCCGCuG-GCCUCgUGgCUGUu -5'
25553 5' -59.2 NC_005337.1 + 98058 0.66 0.705429
Target:  5'- --gCGCGccGCGGCCGGcGCAaaaaaCGACGAa -3'
miRNA:   3'- aaaGCGC--CGCUGGCCuCGUg----GCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 91893 0.66 0.735198
Target:  5'- --cCGCGGCGccuCCGGGuCGCCGGuCAc -3'
miRNA:   3'- aaaGCGCCGCu--GGCCUcGUGGCU-GUu -5'
25553 5' -59.2 NC_005337.1 + 106638 0.66 0.686271
Target:  5'- -aUCGUGGCGcgcuccgccaagaucCCGGAGCGCgagCGGCGGg -3'
miRNA:   3'- aaAGCGCCGCu--------------GGCCUCGUG---GCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 100242 0.66 0.685258
Target:  5'- -aUCGCGGUcccgcccgccauGACCgGGAGCACCuACc- -3'
miRNA:   3'- aaAGCGCCG------------CUGG-CCUCGUGGcUGuu -5'
25553 5' -59.2 NC_005337.1 + 58446 0.66 0.69537
Target:  5'- -aUCaGCGGCGACCGcauGAccucCGCCGACGu -3'
miRNA:   3'- aaAG-CGCCGCUGGC---CUc---GUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 98138 0.66 0.694361
Target:  5'- --cCGCGGCGGCgGGuccguGGCGgccuuccCCGACGAc -3'
miRNA:   3'- aaaGCGCCGCUGgCC-----UCGU-------GGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 46449 0.66 0.685258
Target:  5'- gUUCGCGaucuGCG-CgCGGcGCGCCGGCGAg -3'
miRNA:   3'- aAAGCGC----CGCuG-GCCuCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 99302 0.66 0.685258
Target:  5'- --gCGCGGCGuuCCGcAGCGCCGGg-- -3'
miRNA:   3'- aaaGCGCCGCu-GGCcUCGUGGCUguu -5'
25553 5' -59.2 NC_005337.1 + 45421 0.66 0.69537
Target:  5'- --gCGCGGCG-UCGGAGCGCagcuGCAu -3'
miRNA:   3'- aaaGCGCCGCuGGCCUCGUGgc--UGUu -5'
25553 5' -59.2 NC_005337.1 + 42376 0.66 0.715427
Target:  5'- -gUCGUgaccGGCGAcCCGGAgGCGCCG-CGg -3'
miRNA:   3'- aaAGCG----CCGCU-GGCCU-CGUGGCuGUu -5'
25553 5' -59.2 NC_005337.1 + 5917 0.66 0.685258
Target:  5'- -aUCGCGagcGCGAgCGGGGagaCGCCGGCGu -3'
miRNA:   3'- aaAGCGC---CGCUgGCCUC---GUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 866 0.66 0.735198
Target:  5'- --gCGCGggcGCGGCCGGGcggaagagcGCGCCGAgCAGg -3'
miRNA:   3'- aaaGCGC---CGCUGGCCU---------CGUGGCU-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.