miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25553 5' -59.2 NC_005337.1 + 99302 0.66 0.685258
Target:  5'- --gCGCGGCGuuCCGcAGCGCCGGg-- -3'
miRNA:   3'- aaaGCGCCGCu-GGCcUCGUGGCUguu -5'
25553 5' -59.2 NC_005337.1 + 6898 0.66 0.685258
Target:  5'- -gUCGCGcGCGcGCgGGuccGCGCCGGCGc -3'
miRNA:   3'- aaAGCGC-CGC-UGgCCu--CGUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 21397 0.66 0.685258
Target:  5'- -aUCuCGGCGGCCGcGGCAUCGuCGAc -3'
miRNA:   3'- aaAGcGCCGCUGGCcUCGUGGCuGUU- -5'
25553 5' -59.2 NC_005337.1 + 990 0.66 0.715427
Target:  5'- --gCGCGGCG-CgCGGAGgGCgGGCGu -3'
miRNA:   3'- aaaGCGCCGCuG-GCCUCgUGgCUGUu -5'
25553 5' -59.2 NC_005337.1 + 99532 0.66 0.685258
Target:  5'- --aCGCGGC--CCGGuGCGCCGcCGAc -3'
miRNA:   3'- aaaGCGCCGcuGGCCuCGUGGCuGUU- -5'
25553 5' -59.2 NC_005337.1 + 47936 0.66 0.725353
Target:  5'- -gUUGCGGaggaGGCCGGccugacgcuGGCgACCGACGg -3'
miRNA:   3'- aaAGCGCCg---CUGGCC---------UCG-UGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 46449 0.66 0.685258
Target:  5'- gUUCGCGaucuGCG-CgCGGcGCGCCGGCGAg -3'
miRNA:   3'- aAAGCGC----CGCuG-GCCuCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 71109 0.66 0.734218
Target:  5'- ---gGCGGCGGgcucagcacguccUCGGgcggcGGCACCGGCAAc -3'
miRNA:   3'- aaagCGCCGCU-------------GGCC-----UCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 98138 0.66 0.694361
Target:  5'- --cCGCGGCGGCgGGuccguGGCGgccuuccCCGACGAc -3'
miRNA:   3'- aaaGCGCCGCUGgCC-----UCGU-------GGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 100242 0.66 0.685258
Target:  5'- -aUCGCGGUcccgcccgccauGACCgGGAGCACCuACc- -3'
miRNA:   3'- aaAGCGCCG------------CUGG-CCUCGUGGcUGuu -5'
25553 5' -59.2 NC_005337.1 + 53027 0.66 0.69537
Target:  5'- --cUGCGGCuGugCgGGAGCuGCCGGCGc -3'
miRNA:   3'- aaaGCGCCG-CugG-CCUCG-UGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 3273 0.66 0.69537
Target:  5'- --gCGCGGCGGCCacGuGCAgCGGCGu -3'
miRNA:   3'- aaaGCGCCGCUGGc-CuCGUgGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 58446 0.66 0.69537
Target:  5'- -aUCaGCGGCGACCGcauGAccucCGCCGACGu -3'
miRNA:   3'- aaAG-CGCCGCUGGC---CUc---GUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 308 0.67 0.675102
Target:  5'- ---gGCGGuCGugCGGAcGCACgGACGc -3'
miRNA:   3'- aaagCGCC-GCugGCCU-CGUGgCUGUu -5'
25553 5' -59.2 NC_005337.1 + 9759 0.67 0.623962
Target:  5'- -gUCGgcCGGCG-CCGGguuGGCACCGGCc- -3'
miRNA:   3'- aaAGC--GCCGCuGGCC---UCGUGGCUGuu -5'
25553 5' -59.2 NC_005337.1 + 45064 0.67 0.623962
Target:  5'- --gCGcCGGcCGGCCGGAGauccguGCCGACGu -3'
miRNA:   3'- aaaGC-GCC-GCUGGCCUCg-----UGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 369 0.67 0.675102
Target:  5'- ---gGCGGuCGugCGGAcGCACgGACGc -3'
miRNA:   3'- aaagCGCC-GCugGCCU-CGUGgCUGUu -5'
25553 5' -59.2 NC_005337.1 + 53668 0.67 0.644456
Target:  5'- cUUCGCGGCGugcucGCUGGAcccuugaaGCGCCGGg-- -3'
miRNA:   3'- aAAGCGCCGC-----UGGCCU--------CGUGGCUguu -5'
25553 5' -59.2 NC_005337.1 + 105972 0.67 0.63421
Target:  5'- --aCGCGcGCGACgaGGAGguCACCGGCGu -3'
miRNA:   3'- aaaGCGC-CGCUGg-CCUC--GUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 49375 0.67 0.63421
Target:  5'- ---gGCGGCGACCGccGCACCGcCc- -3'
miRNA:   3'- aaagCGCCGCUGGCcuCGUGGCuGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.