miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25553 5' -59.2 NC_005337.1 + 107533 1.04 0.002516
Target:  5'- gUUUCGCGGCGACCGGAGCACCGACAAg -3'
miRNA:   3'- -AAAGCGCCGCUGGCCUCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 92063 0.79 0.126568
Target:  5'- -cUCGCGGaCGACCGGcuGUACCGGCAGc -3'
miRNA:   3'- aaAGCGCC-GCUGGCCu-CGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 2922 0.79 0.133314
Target:  5'- ---aGCGGCGucGCCGGAGUGCCGACGc -3'
miRNA:   3'- aaagCGCCGC--UGGCCUCGUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 76626 0.78 0.151651
Target:  5'- gUUCGCGGCGcCCGGcAGCACCaGCAu -3'
miRNA:   3'- aAAGCGCCGCuGGCC-UCGUGGcUGUu -5'
25553 5' -59.2 NC_005337.1 + 46013 0.78 0.159607
Target:  5'- --cCGCGGCGcccGCCGGcGCGCCGGCAc -3'
miRNA:   3'- aaaGCGCCGC---UGGCCuCGUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 82632 0.77 0.172249
Target:  5'- --gCGCuGGCGACCgcGGAGCGCCGACc- -3'
miRNA:   3'- aaaGCG-CCGCUGG--CCUCGUGGCUGuu -5'
25553 5' -59.2 NC_005337.1 + 131912 0.76 0.200233
Target:  5'- --aCGCGGuCGACCGGuGCugCGGCGc -3'
miRNA:   3'- aaaGCGCC-GCUGGCCuCGugGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 76838 0.76 0.215658
Target:  5'- -cUCGCGGUGGCCGGAGCGCg----- -3'
miRNA:   3'- aaAGCGCCGCUGGCCUCGUGgcuguu -5'
25553 5' -59.2 NC_005337.1 + 920 0.74 0.280424
Target:  5'- --gCGCGGCGGCggcggcgaggcggCGGAGCGCgGACAu -3'
miRNA:   3'- aaaGCGCCGCUG-------------GCCUCGUGgCUGUu -5'
25553 5' -59.2 NC_005337.1 + 920 0.74 0.280424
Target:  5'- --gCGCGGCGGCggcggcgaggcggCGGAGCGCgGACAu -3'
miRNA:   3'- aaaGCGCCGCUG-------------GCCUCGUGgCUGUu -5'
25553 5' -59.2 NC_005337.1 + 19106 0.74 0.281084
Target:  5'- --aCGcCGGCGuCCGcGGGCGCCGGCAu -3'
miRNA:   3'- aaaGC-GCCGCuGGC-CUCGUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 36368 0.72 0.352615
Target:  5'- ---gGCGGCGGCCccuggcuGGAGUacGCCGACGAg -3'
miRNA:   3'- aaagCGCCGCUGG-------CCUCG--UGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 36544 0.72 0.3534
Target:  5'- --cCcCGGCGGCUGGgcGGCGCCGGCGAg -3'
miRNA:   3'- aaaGcGCCGCUGGCC--UCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 59673 0.72 0.361315
Target:  5'- -gUCGCGGCu-CCGGgaGGCGCCGAUg- -3'
miRNA:   3'- aaAGCGCCGcuGGCC--UCGUGGCUGuu -5'
25553 5' -59.2 NC_005337.1 + 39270 0.72 0.369354
Target:  5'- gUUCGCGGUGGCCGcGcuGGCGgCGGCGGu -3'
miRNA:   3'- aAAGCGCCGCUGGC-C--UCGUgGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 23075 0.72 0.377513
Target:  5'- --aCGCGGCGGCCGu-GC-CCGGCAu -3'
miRNA:   3'- aaaGCGCCGCUGGCcuCGuGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 65797 0.72 0.385794
Target:  5'- --gCGCGGCGcCCGGuGCGgCGGCGu -3'
miRNA:   3'- aaaGCGCCGCuGGCCuCGUgGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 42143 0.71 0.40271
Target:  5'- --cCGCGGCGcguCCGGggucuggaagAGCACCGACu- -3'
miRNA:   3'- aaaGCGCCGCu--GGCC----------UCGUGGCUGuu -5'
25553 5' -59.2 NC_005337.1 + 77157 0.71 0.411342
Target:  5'- -cUgGCGGCGACCacGGGGUacuGCCGGCGc -3'
miRNA:   3'- aaAgCGCCGCUGG--CCUCG---UGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 133727 0.71 0.428947
Target:  5'- --gCGCGGCGGuggCGGAgugGCGCCGGCAGc -3'
miRNA:   3'- aaaGCGCCGCUg--GCCU---CGUGGCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.