miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25553 5' -59.2 NC_005337.1 + 2682 0.69 0.532881
Target:  5'- --cCGCaGGaCGuCCGGAGCugCGGCGu -3'
miRNA:   3'- aaaGCG-CC-GCuGGCCUCGugGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 44415 0.7 0.465442
Target:  5'- -aUCGUGGgucuGCCGGAGCGCCGGgAGc -3'
miRNA:   3'- aaAGCGCCgc--UGGCCUCGUGGCUgUU- -5'
25553 5' -59.2 NC_005337.1 + 38704 0.7 0.473875
Target:  5'- -gUCgGCGGCGGCCcgucguccugacgGGGGaCACCGGCGu -3'
miRNA:   3'- aaAG-CGCCGCUGG-------------CCUC-GUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 35588 0.69 0.502518
Target:  5'- --gCGaGGCGgauccccGCCGGAGCACCGugGc -3'
miRNA:   3'- aaaGCgCCGC-------UGGCCUCGUGGCugUu -5'
25553 5' -59.2 NC_005337.1 + 94731 0.69 0.503486
Target:  5'- ---aGCGcCcGCCGGGGCGCCGGCAGc -3'
miRNA:   3'- aaagCGCcGcUGGCCUCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 1136 0.69 0.503486
Target:  5'- --aCGCGcGCGACCagcuccgcggGGAGCgcGCCGGCGGa -3'
miRNA:   3'- aaaGCGC-CGCUGG----------CCUCG--UGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 16658 0.69 0.51321
Target:  5'- --aCGCGGCGGCCGGucgagacgAGggUCGACAGc -3'
miRNA:   3'- aaaGCGCCGCUGGCC--------UCguGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 33531 0.69 0.51321
Target:  5'- -aUCGCGGCGGa--GAGCGCgGACAc -3'
miRNA:   3'- aaAGCGCCGCUggcCUCGUGgCUGUu -5'
25553 5' -59.2 NC_005337.1 + 46904 0.69 0.52301
Target:  5'- -cUCGUGGUGuguCUGGAGC-CCGACc- -3'
miRNA:   3'- aaAGCGCCGCu--GGCCUCGuGGCUGuu -5'
25553 5' -59.2 NC_005337.1 + 95340 0.7 0.465442
Target:  5'- -gUCGCaguaGCG-CCGGAGCGCCGAg-- -3'
miRNA:   3'- aaAGCGc---CGCuGGCCUCGUGGCUguu -5'
25553 5' -59.2 NC_005337.1 + 129602 0.7 0.456165
Target:  5'- --gCGCGaGCGACCguGGAGCucguCCGGCGg -3'
miRNA:   3'- aaaGCGC-CGCUGG--CCUCGu---GGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 133727 0.71 0.428947
Target:  5'- --gCGCGGCGGuggCGGAgugGCGCCGGCAGc -3'
miRNA:   3'- aaaGCGCCGCUg--GCCU---CGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 46013 0.78 0.159607
Target:  5'- --cCGCGGCGcccGCCGGcGCGCCGGCAc -3'
miRNA:   3'- aaaGCGCCGC---UGGCCuCGUGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 76838 0.76 0.215658
Target:  5'- -cUCGCGGUGGCCGGAGCGCg----- -3'
miRNA:   3'- aaAGCGCCGCUGGCCUCGUGgcuguu -5'
25553 5' -59.2 NC_005337.1 + 920 0.74 0.280424
Target:  5'- --gCGCGGCGGCggcggcgaggcggCGGAGCGCgGACAu -3'
miRNA:   3'- aaaGCGCCGCUG-------------GCCUCGUGgCUGUu -5'
25553 5' -59.2 NC_005337.1 + 36368 0.72 0.352615
Target:  5'- ---gGCGGCGGCCccuggcuGGAGUacGCCGACGAg -3'
miRNA:   3'- aaagCGCCGCUGG-------CCUCG--UGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 36544 0.72 0.3534
Target:  5'- --cCcCGGCGGCUGGgcGGCGCCGGCGAg -3'
miRNA:   3'- aaaGcGCCGCUGGCC--UCGUGGCUGUU- -5'
25553 5' -59.2 NC_005337.1 + 23075 0.72 0.377513
Target:  5'- --aCGCGGCGGCCGu-GC-CCGGCAu -3'
miRNA:   3'- aaaGCGCCGCUGGCcuCGuGGCUGUu -5'
25553 5' -59.2 NC_005337.1 + 42143 0.71 0.40271
Target:  5'- --cCGCGGCGcguCCGGggucuggaagAGCACCGACu- -3'
miRNA:   3'- aaaGCGCCGCu--GGCC----------UCGUGGCUGuu -5'
25553 5' -59.2 NC_005337.1 + 77157 0.71 0.411342
Target:  5'- -cUgGCGGCGACCacGGGGUacuGCCGGCGc -3'
miRNA:   3'- aaAgCGCCGCUGG--CCUCG---UGGCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.