miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25554 3' -51.5 NC_005337.1 + 63945 0.66 0.985429
Target:  5'- cGGAACgCCGUCUucgUGCGCGUGcaccGCgUCa -3'
miRNA:   3'- -UCUUGgGGCAGA---GCGUGUAUu---CGaAG- -5'
25554 3' -51.5 NC_005337.1 + 61389 0.66 0.985429
Target:  5'- aAGAGCUCCGUCgcggaggcgUGCACGUccAGCa-- -3'
miRNA:   3'- -UCUUGGGGCAGa--------GCGUGUAu-UCGaag -5'
25554 3' -51.5 NC_005337.1 + 99203 0.66 0.981486
Target:  5'- cAGGGCCCCGacagcggcuucuUCgCGCGCAUaAAGCccgugUCg -3'
miRNA:   3'- -UCUUGGGGC------------AGaGCGUGUA-UUCGa----AG- -5'
25554 3' -51.5 NC_005337.1 + 98344 0.66 0.981486
Target:  5'- cGGACUUCGUCaCGCACGUGgacgGGCg-- -3'
miRNA:   3'- uCUUGGGGCAGaGCGUGUAU----UCGaag -5'
25554 3' -51.5 NC_005337.1 + 100582 0.66 0.981486
Target:  5'- uGGGCCUCaUCUCGCGCucgcGGCUg- -3'
miRNA:   3'- uCUUGGGGcAGAGCGUGuau-UCGAag -5'
25554 3' -51.5 NC_005337.1 + 21424 0.66 0.981486
Target:  5'- uGGGCCgCGgccagCUCGCG---GAGCUUCg -3'
miRNA:   3'- uCUUGGgGCa----GAGCGUguaUUCGAAG- -5'
25554 3' -51.5 NC_005337.1 + 88477 0.66 0.979237
Target:  5'- cAGAACUCCGcgCUCGC-CA--AGCUg- -3'
miRNA:   3'- -UCUUGGGGCa-GAGCGuGUauUCGAag -5'
25554 3' -51.5 NC_005337.1 + 130578 0.66 0.976793
Target:  5'- cAGGACCCUG-CUgcacgCGUGCAUGGGCg-- -3'
miRNA:   3'- -UCUUGGGGCaGA-----GCGUGUAUUCGaag -5'
25554 3' -51.5 NC_005337.1 + 64266 0.66 0.976793
Target:  5'- uGGGACCCgGg--CGCGCcgGAGCa-- -3'
miRNA:   3'- -UCUUGGGgCagaGCGUGuaUUCGaag -5'
25554 3' -51.5 NC_005337.1 + 25927 0.66 0.974143
Target:  5'- --cACCgCCGUCUcCGCGCucuucucAGCUUCu -3'
miRNA:   3'- ucuUGG-GGCAGA-GCGUGuau----UCGAAG- -5'
25554 3' -51.5 NC_005337.1 + 10594 0.66 0.974143
Target:  5'- cGAGCCCgGUCcCGCcGCGgggGAGCggCg -3'
miRNA:   3'- uCUUGGGgCAGaGCG-UGUa--UUCGaaG- -5'
25554 3' -51.5 NC_005337.1 + 58985 0.67 0.968196
Target:  5'- cGGAGCUCgGUCgcuacgCGCGCAUcaaGAGCg-- -3'
miRNA:   3'- -UCUUGGGgCAGa-----GCGUGUA---UUCGaag -5'
25554 3' -51.5 NC_005337.1 + 32770 0.67 0.968196
Target:  5'- -cAGCCgCGcggagcgCUCGCGCAUGAGCg-- -3'
miRNA:   3'- ucUUGGgGCa------GAGCGUGUAUUCGaag -5'
25554 3' -51.5 NC_005337.1 + 130705 0.67 0.964883
Target:  5'- aAGu-CCCCGUCcgCGUGCGUgGAGCUcgUCg -3'
miRNA:   3'- -UCuuGGGGCAGa-GCGUGUA-UUCGA--AG- -5'
25554 3' -51.5 NC_005337.1 + 1355 0.67 0.961337
Target:  5'- uGAACUCCGcgCUCGCGuCAUcuGAGCg-- -3'
miRNA:   3'- uCUUGGGGCa-GAGCGU-GUA--UUCGaag -5'
25554 3' -51.5 NC_005337.1 + 12745 0.67 0.961337
Target:  5'- aGGAugUCCGUCUC-CACGUccGCg-- -3'
miRNA:   3'- -UCUugGGGCAGAGcGUGUAuuCGaag -5'
25554 3' -51.5 NC_005337.1 + 13939 0.67 0.961337
Target:  5'- -cAGCCCCGUCgUGCucCAUGGGCg-- -3'
miRNA:   3'- ucUUGGGGCAGaGCGu-GUAUUCGaag -5'
25554 3' -51.5 NC_005337.1 + 39675 0.67 0.957549
Target:  5'- -uGGCCCCGggcaCGUACGUGcGCUUCu -3'
miRNA:   3'- ucUUGGGGCaga-GCGUGUAUuCGAAG- -5'
25554 3' -51.5 NC_005337.1 + 121498 0.67 0.957549
Target:  5'- uGGGCCUCGUCaUCGCgGCAgcGGCggUCu -3'
miRNA:   3'- uCUUGGGGCAG-AGCG-UGUauUCGa-AG- -5'
25554 3' -51.5 NC_005337.1 + 77189 0.67 0.957549
Target:  5'- cAGcgUCgCCGUCUCGCGCGUGAuccGCa-- -3'
miRNA:   3'- -UCuuGG-GGCAGAGCGUGUAUU---CGaag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.