miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25554 5' -58.8 NC_005337.1 + 50427 0.66 0.771825
Target:  5'- ---cGGCGGGCGCuuccgcccgggauucGGGcGGCGCGuGUUg -3'
miRNA:   3'- uguuCCGCCCGCG---------------UCU-CUGCGC-CAAg -5'
25554 5' -58.8 NC_005337.1 + 9699 0.66 0.768079
Target:  5'- cGCAGGGUa-GCGCuuGGACGCGGccUCg -3'
miRNA:   3'- -UGUUCCGccCGCGucUCUGCGCCa-AG- -5'
25554 5' -58.8 NC_005337.1 + 110952 0.66 0.758632
Target:  5'- --uGGGCGuGCGCAGcuGCGCGGccgcgUCg -3'
miRNA:   3'- uguUCCGCcCGCGUCucUGCGCCa----AG- -5'
25554 5' -58.8 NC_005337.1 + 38591 0.66 0.758632
Target:  5'- -gGAGGCGuGGCGC-GAGcgcaGCGUGGg-- -3'
miRNA:   3'- ugUUCCGC-CCGCGuCUC----UGCGCCaag -5'
25554 5' -58.8 NC_005337.1 + 57574 0.66 0.758632
Target:  5'- cACGAGaCGGGCGUcGGGAagaccaugacCGCGGUg- -3'
miRNA:   3'- -UGUUCcGCCCGCGuCUCU----------GCGCCAag -5'
25554 5' -58.8 NC_005337.1 + 64194 0.66 0.758632
Target:  5'- gGCAAGGacaGGGuCGCGcacGAGuuCGCGGUcCg -3'
miRNA:   3'- -UGUUCCg--CCC-GCGU---CUCu-GCGCCAaG- -5'
25554 5' -58.8 NC_005337.1 + 60272 0.66 0.749074
Target:  5'- uCGGGGCaGGCGCGGGGGugggaGUGGg-- -3'
miRNA:   3'- uGUUCCGcCCGCGUCUCUg----CGCCaag -5'
25554 5' -58.8 NC_005337.1 + 5919 0.66 0.749074
Target:  5'- cGCGAGcGCGaGCGgGGAGACGcCGGc-- -3'
miRNA:   3'- -UGUUC-CGCcCGCgUCUCUGC-GCCaag -5'
25554 5' -58.8 NC_005337.1 + 4109 0.66 0.749074
Target:  5'- uCAccGCGcGCGCGGAGACGCGcGgaCa -3'
miRNA:   3'- uGUucCGCcCGCGUCUCUGCGC-CaaG- -5'
25554 5' -58.8 NC_005337.1 + 43835 0.66 0.749074
Target:  5'- uGCA--GCGGGC-CGGcGGCGCGGUg- -3'
miRNA:   3'- -UGUucCGCCCGcGUCuCUGCGCCAag -5'
25554 5' -58.8 NC_005337.1 + 109018 0.66 0.749074
Target:  5'- cGCGGaacGUGGGCGUGGAGAuccUGCGGUc- -3'
miRNA:   3'- -UGUUc--CGCCCGCGUCUCU---GCGCCAag -5'
25554 5' -58.8 NC_005337.1 + 50742 0.66 0.74329
Target:  5'- gACGAGacgaugcucgugaucGCGGGCGCAcGcG-UGCGGUUCc -3'
miRNA:   3'- -UGUUC---------------CGCCCGCGU-CuCuGCGCCAAG- -5'
25554 5' -58.8 NC_005337.1 + 93274 0.66 0.739414
Target:  5'- gGCGAGGCcggGGGUGCGucGGCGCcuGGUg- -3'
miRNA:   3'- -UGUUCCG---CCCGCGUcuCUGCG--CCAag -5'
25554 5' -58.8 NC_005337.1 + 96091 0.66 0.739414
Target:  5'- cACGGGGCacgcGGGCGCGGcggaGGACauGCGGc-- -3'
miRNA:   3'- -UGUUCCG----CCCGCGUC----UCUG--CGCCaag -5'
25554 5' -58.8 NC_005337.1 + 729 0.66 0.739414
Target:  5'- cGCGGGguacGCGGGCG-AGAG-CGCGGcgCc -3'
miRNA:   3'- -UGUUC----CGCCCGCgUCUCuGCGCCaaG- -5'
25554 5' -58.8 NC_005337.1 + 729 0.66 0.739414
Target:  5'- cGCGGGguacGCGGGCG-AGAG-CGCGGcgCc -3'
miRNA:   3'- -UGUUC----CGCCCGCgUCUCuGCGCCaaG- -5'
25554 5' -58.8 NC_005337.1 + 131159 0.66 0.739414
Target:  5'- cGCGAGGCcGGcCGCGGu--CGCGGUc- -3'
miRNA:   3'- -UGUUCCGcCC-GCGUCucuGCGCCAag -5'
25554 5' -58.8 NC_005337.1 + 121794 0.66 0.739414
Target:  5'- cGCcGGuGCGGaCGCGGAGGCGCuGGa-- -3'
miRNA:   3'- -UGuUC-CGCCcGCGUCUCUGCG-CCaag -5'
25554 5' -58.8 NC_005337.1 + 91670 0.66 0.739414
Target:  5'- cACAuGGCGGGCGCuAGcAGcCGCGa--- -3'
miRNA:   3'- -UGUuCCGCCCGCG-UC-UCuGCGCcaag -5'
25554 5' -58.8 NC_005337.1 + 11311 0.66 0.729662
Target:  5'- cACGcGGGCGuuGGCGCAGAGguccgucccauGCGCcaccaccgGGUUCa -3'
miRNA:   3'- -UGU-UCCGC--CCGCGUCUC-----------UGCG--------CCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.