miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25554 5' -58.8 NC_005337.1 + 729 0.66 0.739414
Target:  5'- cGCGGGguacGCGGGCG-AGAG-CGCGGcgCc -3'
miRNA:   3'- -UGUUC----CGCCCGCgUCUCuGCGCCaaG- -5'
25554 5' -58.8 NC_005337.1 + 729 0.66 0.739414
Target:  5'- cGCGGGguacGCGGGCG-AGAG-CGCGGcgCc -3'
miRNA:   3'- -UGUUC----CGCCCGCgUCUCuGCGCCaaG- -5'
25554 5' -58.8 NC_005337.1 + 852 0.69 0.558155
Target:  5'- -gAAGGCGGcGgGCAGcgcGGGCGCGGc-- -3'
miRNA:   3'- ugUUCCGCC-CgCGUC---UCUGCGCCaag -5'
25554 5' -58.8 NC_005337.1 + 852 0.69 0.558155
Target:  5'- -gAAGGCGGcGgGCAGcgcGGGCGCGGc-- -3'
miRNA:   3'- ugUUCCGCC-CgCGUC---UCUGCGCCaag -5'
25554 5' -58.8 NC_005337.1 + 933 0.7 0.528417
Target:  5'- gGCGAGGCGGcggaGCGCGGAcaugcuggcGGCGgCGGggCu -3'
miRNA:   3'- -UGUUCCGCC----CGCGUCU---------CUGC-GCCaaG- -5'
25554 5' -58.8 NC_005337.1 + 933 0.7 0.528417
Target:  5'- gGCGAGGCGGcggaGCGCGGAcaugcuggcGGCGgCGGggCu -3'
miRNA:   3'- -UGUUCCGCC----CGCGUCU---------CUGC-GCCaaG- -5'
25554 5' -58.8 NC_005337.1 + 980 0.72 0.416716
Target:  5'- gGCGGGGCuGGCGCGGc-GCGCGGa-- -3'
miRNA:   3'- -UGUUCCGcCCGCGUCucUGCGCCaag -5'
25554 5' -58.8 NC_005337.1 + 980 0.72 0.416716
Target:  5'- gGCGGGGCuGGCGCGGc-GCGCGGa-- -3'
miRNA:   3'- -UGUUCCGcCCGCGUCucUGCGCCaag -5'
25554 5' -58.8 NC_005337.1 + 1046 0.71 0.470889
Target:  5'- -gGAGGCGGGCgGCgGGAGGCcgGCGGg-- -3'
miRNA:   3'- ugUUCCGCCCG-CG-UCUCUG--CGCCaag -5'
25554 5' -58.8 NC_005337.1 + 1046 0.71 0.470889
Target:  5'- -gGAGGCGGGCgGCgGGAGGCcgGCGGg-- -3'
miRNA:   3'- ugUUCCGCCCG-CG-UCUCUG--CGCCaag -5'
25554 5' -58.8 NC_005337.1 + 1180 0.68 0.659557
Target:  5'- cGCuAGGCGGuGCGC-GAG-CGCGGc-- -3'
miRNA:   3'- -UGuUCCGCC-CGCGuCUCuGCGCCaag -5'
25554 5' -58.8 NC_005337.1 + 2173 0.69 0.598484
Target:  5'- cGCAcGGCGccgacgcgcacGGCGCAGgcggcGGACGCGGg-- -3'
miRNA:   3'- -UGUuCCGC-----------CCGCGUC-----UCUGCGCCaag -5'
25554 5' -58.8 NC_005337.1 + 2683 0.67 0.719825
Target:  5'- cGCAGGaCGuccggagcugcGGCGUGGGGACGCGGa-- -3'
miRNA:   3'- -UGUUCcGC-----------CCGCGUCUCUGCGCCaag -5'
25554 5' -58.8 NC_005337.1 + 4109 0.66 0.749074
Target:  5'- uCAccGCGcGCGCGGAGACGCGcGgaCa -3'
miRNA:   3'- uGUucCGCcCGCGUCUCUGCGC-CaaG- -5'
25554 5' -58.8 NC_005337.1 + 5919 0.66 0.749074
Target:  5'- cGCGAGcGCGaGCGgGGAGACGcCGGc-- -3'
miRNA:   3'- -UGUUC-CGCcCGCgUCUCUGC-GCCaag -5'
25554 5' -58.8 NC_005337.1 + 7051 0.73 0.33545
Target:  5'- uCGGGGCGGGCgGCGGGGuuGCGCGcGUa- -3'
miRNA:   3'- uGUUCCGCCCG-CGUCUC--UGCGC-CAag -5'
25554 5' -58.8 NC_005337.1 + 9699 0.66 0.768079
Target:  5'- cGCAGGGUa-GCGCuuGGACGCGGccUCg -3'
miRNA:   3'- -UGUUCCGccCGCGucUCUGCGCCa-AG- -5'
25554 5' -58.8 NC_005337.1 + 10080 0.67 0.698938
Target:  5'- aACAGGGUgccGGGCGCGaagcgggcGAGguccacgaaggucACGCGGUUg -3'
miRNA:   3'- -UGUUCCG---CCCGCGU--------CUC-------------UGCGCCAAg -5'
25554 5' -58.8 NC_005337.1 + 10290 0.67 0.699938
Target:  5'- aGCAuGGCGcGCGCAucGGCGCcGUUCg -3'
miRNA:   3'- -UGUuCCGCcCGCGUcuCUGCGcCAAG- -5'
25554 5' -58.8 NC_005337.1 + 11311 0.66 0.729662
Target:  5'- cACGcGGGCGuuGGCGCAGAGguccgucccauGCGCcaccaccgGGUUCa -3'
miRNA:   3'- -UGU-UCCGC--CCGCGUCUC-----------UGCG--------CCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.