miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25555 3' -50 NC_005337.1 + 14121 0.66 0.997189
Target:  5'- gCCGGCGGUGUguGuGAACGCauaaGGCu -3'
miRNA:   3'- -GGCUGCCGCAguU-CUUGUGguugUUG- -5'
25555 3' -50 NC_005337.1 + 2692 0.66 0.997189
Target:  5'- uCCGgagcuGCGGCGUgGggacgcggaGGAGCACgagcgCGACGACg -3'
miRNA:   3'- -GGC-----UGCCGCAgU---------UCUUGUG-----GUUGUUG- -5'
25555 3' -50 NC_005337.1 + 36309 0.66 0.997141
Target:  5'- gCgGAUGGCGcgcacggaggaggUCGGGAACACguAgAGCg -3'
miRNA:   3'- -GgCUGCCGC-------------AGUUCUUGUGguUgUUG- -5'
25555 3' -50 NC_005337.1 + 4468 0.66 0.997042
Target:  5'- aUCGACGcGCGgCAGGugcucugcaucgccAGCACguGCAGCg -3'
miRNA:   3'- -GGCUGC-CGCaGUUC--------------UUGUGguUGUUG- -5'
25555 3' -50 NC_005337.1 + 92907 0.66 0.997042
Target:  5'- gCCGGCgucGGCGgCAAGGccgugaugauggcgACGCCGuucuACAGCg -3'
miRNA:   3'- -GGCUG---CCGCaGUUCU--------------UGUGGU----UGUUG- -5'
25555 3' -50 NC_005337.1 + 105508 0.66 0.996889
Target:  5'- uUGGCGGUGgcuaucguuuccucCAGGGGCuuCAGCAGCg -3'
miRNA:   3'- gGCUGCCGCa-------------GUUCUUGugGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 68901 0.66 0.996837
Target:  5'- aCGAUGGUGUCuauGGAguugacgagcuggACguucuucacguccagGCCGACGACg -3'
miRNA:   3'- gGCUGCCGCAGu--UCU-------------UG---------------UGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 31026 0.66 0.996676
Target:  5'- -aGugGGCcaccgcgCGGGcgcGCACCAGCGGCa -3'
miRNA:   3'- ggCugCCGca-----GUUCu--UGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 15503 0.66 0.996676
Target:  5'- gCgGACaGCGUCGccAGcAagcaugucacgcACACCGACAACa -3'
miRNA:   3'- -GgCUGcCGCAGU--UC-U------------UGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 44415 0.66 0.996676
Target:  5'- aUCGugGGUcugCcGGAGCGCCGGgAGCc -3'
miRNA:   3'- -GGCugCCGca-GuUCUUGUGGUUgUUG- -5'
25555 3' -50 NC_005337.1 + 9306 0.66 0.996676
Target:  5'- gCUGGCGGCGaac---GCACgGACGACa -3'
miRNA:   3'- -GGCUGCCGCaguucuUGUGgUUGUUG- -5'
25555 3' -50 NC_005337.1 + 106235 0.66 0.996676
Target:  5'- aUGGCGGCgGUCGcGu--GCCGGCGGCa -3'
miRNA:   3'- gGCUGCCG-CAGUuCuugUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 58225 0.66 0.996676
Target:  5'- gCCGcGCGGCgGUCAuGGAGCGCaagucCGGCg -3'
miRNA:   3'- -GGC-UGCCG-CAGU-UCUUGUGguu--GUUG- -5'
25555 3' -50 NC_005337.1 + 130755 0.66 0.996676
Target:  5'- uCCGACGuGUG-CAccguGGACGCCcgccACAACa -3'
miRNA:   3'- -GGCUGC-CGCaGUu---CUUGUGGu---UGUUG- -5'
25555 3' -50 NC_005337.1 + 89846 0.66 0.996676
Target:  5'- uCCGGCGGCGgcucCcGGcGCuCCGGCAGa -3'
miRNA:   3'- -GGCUGCCGCa---GuUCuUGuGGUUGUUg -5'
25555 3' -50 NC_005337.1 + 91863 0.66 0.996676
Target:  5'- gCCGAagcCGGCGcacagCGAGGccgcGCGCC-GCGGCg -3'
miRNA:   3'- -GGCU---GCCGCa----GUUCU----UGUGGuUGUUG- -5'
25555 3' -50 NC_005337.1 + 13282 0.66 0.996676
Target:  5'- gCCGAgGGCGaugcgCAGGAGgGCgGGCucGCa -3'
miRNA:   3'- -GGCUgCCGCa----GUUCUUgUGgUUGu-UG- -5'
25555 3' -50 NC_005337.1 + 39892 0.66 0.996676
Target:  5'- aUCGACuuCGggAAGAACACCAACGuaACg -3'
miRNA:   3'- -GGCUGccGCagUUCUUGUGGUUGU--UG- -5'
25555 3' -50 NC_005337.1 + 47932 0.66 0.996332
Target:  5'- aCCGGCGaaGCGUgGAgcgacuGAACGCCAuguucgcgcgcgaguGCGGCg -3'
miRNA:   3'- -GGCUGC--CGCAgUU------CUUGUGGU---------------UGUUG- -5'
25555 3' -50 NC_005337.1 + 72363 0.66 0.996087
Target:  5'- -aGACGGaCGUCGAGAucggggACAUCGugGuGCa -3'
miRNA:   3'- ggCUGCC-GCAGUUCU------UGUGGUugU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.