miRNA display CGI


Results 1 - 20 of 329 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25555 3' -50 NC_005337.1 + 49677 0.66 0.995417
Target:  5'- aCC-ACGGCGUCGcucguGGucacccACACCAGCGc- -3'
miRNA:   3'- -GGcUGCCGCAGU-----UCu-----UGUGGUUGUug -5'
25555 3' -50 NC_005337.1 + 41147 0.66 0.994655
Target:  5'- -aGACGcGCGUCcGGGACcgucuCCAGgGGCa -3'
miRNA:   3'- ggCUGC-CGCAGuUCUUGu----GGUUgUUG- -5'
25555 3' -50 NC_005337.1 + 3063 0.66 0.994655
Target:  5'- aCCGGCGGCuagCGcGGAcuccgcGCACCucgGCGACg -3'
miRNA:   3'- -GGCUGCCGca-GU-UCU------UGUGGu--UGUUG- -5'
25555 3' -50 NC_005337.1 + 41829 0.66 0.996024
Target:  5'- aCCGGCGGUGgUCGAaggagauGAGCACguGCucgAGCa -3'
miRNA:   3'- -GGCUGCCGC-AGUU-------CUUGUGguUG---UUG- -5'
25555 3' -50 NC_005337.1 + 17683 0.66 0.995417
Target:  5'- aCCG-CGGCGUUGAuggcGGGCAUgGGCGAg -3'
miRNA:   3'- -GGCuGCCGCAGUU----CUUGUGgUUGUUg -5'
25555 3' -50 NC_005337.1 + 7537 0.66 0.994655
Target:  5'- uCCu-CGuGCGaCGAGAACACCGACu-- -3'
miRNA:   3'- -GGcuGC-CGCaGUUCUUGUGGUUGuug -5'
25555 3' -50 NC_005337.1 + 72363 0.66 0.996087
Target:  5'- -aGACGGaCGUCGAGAucggggACAUCGugGuGCa -3'
miRNA:   3'- ggCUGCC-GCAGUUCU------UGUGGUugU-UG- -5'
25555 3' -50 NC_005337.1 + 48363 0.66 0.996087
Target:  5'- gCCG-CGGUGguggaCGAGAACGUCAGCcGCg -3'
miRNA:   3'- -GGCuGCCGCa----GUUCUUGUGGUUGuUG- -5'
25555 3' -50 NC_005337.1 + 4180 0.66 0.995198
Target:  5'- aUGACGGCGUCcuccauCACCGggugguccauuccaGCGGCg -3'
miRNA:   3'- gGCUGCCGCAGuucuu-GUGGU--------------UGUUG- -5'
25555 3' -50 NC_005337.1 + 9759 0.66 0.996087
Target:  5'- gUCGGcCGGCGcCGGGuugGCACCGGCc-- -3'
miRNA:   3'- -GGCU-GCCGCaGUUCu--UGUGGUUGuug -5'
25555 3' -50 NC_005337.1 + 89637 0.66 0.994655
Target:  5'- cCCGcuGCGGCGcacgaUCAGGAgcaGCGCCuuCAGg -3'
miRNA:   3'- -GGC--UGCCGC-----AGUUCU---UGUGGuuGUUg -5'
25555 3' -50 NC_005337.1 + 123657 0.66 0.995417
Target:  5'- gCGACGGuCGUCcu-GGCGCCGccgcucccccGCGGCg -3'
miRNA:   3'- gGCUGCC-GCAGuucUUGUGGU----------UGUUG- -5'
25555 3' -50 NC_005337.1 + 22923 0.66 0.995488
Target:  5'- gCGACaGCGUCcuccgcuacuuccuGGACGCCAGCugGGCa -3'
miRNA:   3'- gGCUGcCGCAGuu------------CUUGUGGUUG--UUG- -5'
25555 3' -50 NC_005337.1 + 14121 0.66 0.997189
Target:  5'- gCCGGCGGUGUguGuGAACGCauaaGGCu -3'
miRNA:   3'- -GGCUGCCGCAguU-CUUGUGguugUUG- -5'
25555 3' -50 NC_005337.1 + 14648 0.66 0.994655
Target:  5'- aCCGA-GGCGUCcuccGGCAUCAGCGcgGCg -3'
miRNA:   3'- -GGCUgCCGCAGuuc-UUGUGGUUGU--UG- -5'
25555 3' -50 NC_005337.1 + 67738 0.66 0.996087
Target:  5'- aCCGGCGGCGcggcgcgcagcUCcAGcgucucggccGGCugCAGCGGCu -3'
miRNA:   3'- -GGCUGCCGC-----------AGuUC----------UUGugGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 74480 0.66 0.994655
Target:  5'- aCCGACGGCcUCGuGGucgcgugccgGCGCCGGCu-- -3'
miRNA:   3'- -GGCUGCCGcAGUuCU----------UGUGGUUGuug -5'
25555 3' -50 NC_005337.1 + 49834 0.66 0.995417
Target:  5'- aCGAgCaGCuGUCGcacgcgaaccGGGACGCCGGCGGCa -3'
miRNA:   3'- gGCU-GcCG-CAGU----------UCUUGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 15248 0.66 0.995417
Target:  5'- cCUGGCGGCGcCG---GCGCCGaacguugugGCGACg -3'
miRNA:   3'- -GGCUGCCGCaGUucuUGUGGU---------UGUUG- -5'
25555 3' -50 NC_005337.1 + 122026 0.66 0.995417
Target:  5'- gCGACGGacaugcUCGAGAacACGCCGcugcACAGCc -3'
miRNA:   3'- gGCUGCCgc----AGUUCU--UGUGGU----UGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.