miRNA display CGI


Results 1 - 20 of 329 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25555 3' -50 NC_005337.1 + 105314 1.12 0.007493
Target:  5'- gCCGACGGCGUCAAGAACACCAACAACc -3'
miRNA:   3'- -GGCUGCCGCAGUUCUUGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 68516 0.83 0.385406
Target:  5'- gCGcCGGCGUCAGGAACACCGAg--- -3'
miRNA:   3'- gGCuGCCGCAGUUCUUGUGGUUguug -5'
25555 3' -50 NC_005337.1 + 83269 0.82 0.421072
Target:  5'- aCUGGCGGC-UCGAGGGCcggGCCGACGACg -3'
miRNA:   3'- -GGCUGCCGcAGUUCUUG---UGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 37694 0.81 0.449091
Target:  5'- gCGGCGGCGUCcAGGACGCCGAg--- -3'
miRNA:   3'- gGCUGCCGCAGuUCUUGUGGUUguug -5'
25555 3' -50 NC_005337.1 + 112678 0.8 0.542836
Target:  5'- -gGACGGCGUUAAGGcggccuaccgcacagGCACCGGCAAg -3'
miRNA:   3'- ggCUGCCGCAGUUCU---------------UGUGGUUGUUg -5'
25555 3' -50 NC_005337.1 + 104912 0.79 0.549065
Target:  5'- gCGACGGCcgccGUCGAGGGCACCAcgGACc -3'
miRNA:   3'- gGCUGCCG----CAGUUCUUGUGGUugUUG- -5'
25555 3' -50 NC_005337.1 + 1314 0.79 0.549065
Target:  5'- uCCGGCGGCG-CAGGAGguCCAGCGc- -3'
miRNA:   3'- -GGCUGCCGCaGUUCUUguGGUUGUug -5'
25555 3' -50 NC_005337.1 + 51982 0.79 0.559495
Target:  5'- gCUGGCGGCGgc-GGGGCACCAcuACGACg -3'
miRNA:   3'- -GGCUGCCGCaguUCUUGUGGU--UGUUG- -5'
25555 3' -50 NC_005337.1 + 12654 0.79 0.569979
Target:  5'- gCCGugGGUGuUCAGGuACGCgAACAGCg -3'
miRNA:   3'- -GGCugCCGC-AGUUCuUGUGgUUGUUG- -5'
25555 3' -50 NC_005337.1 + 108888 0.79 0.584736
Target:  5'- gUCGACGGCGgcggCAgcgagcgcgugagcaAGGGCACCAGCGAg -3'
miRNA:   3'- -GGCUGCCGCa---GU---------------UCUUGUGGUUGUUg -5'
25555 3' -50 NC_005337.1 + 34004 0.78 0.622961
Target:  5'- uCCaGCGGCGUCAggaGGAGCACCcgcuCGGCg -3'
miRNA:   3'- -GGcUGCCGCAGU---UCUUGUGGuu--GUUG- -5'
25555 3' -50 NC_005337.1 + 43982 0.77 0.659157
Target:  5'- cCCGGCGGCGaggaggccgagacgcUCGAGAACuCCAGCuccGCg -3'
miRNA:   3'- -GGCUGCCGC---------------AGUUCUUGuGGUUGu--UG- -5'
25555 3' -50 NC_005337.1 + 82622 0.77 0.665527
Target:  5'- gCGACGGCGggCGcuggcgaccgcGGAGCGCCGACcGCa -3'
miRNA:   3'- gGCUGCCGCa-GU-----------UCUUGUGGUUGuUG- -5'
25555 3' -50 NC_005337.1 + 92513 0.77 0.676118
Target:  5'- gCCGACGGCuacaUCAuagccgccgagcAGcAGCGCCAACAGCg -3'
miRNA:   3'- -GGCUGCCGc---AGU------------UC-UUGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 122898 0.76 0.70762
Target:  5'- aCGAcuuCGGCGUgGGGAGCAUCGACAu- -3'
miRNA:   3'- gGCU---GCCGCAgUUCUUGUGGUUGUug -5'
25555 3' -50 NC_005337.1 + 99183 0.76 0.70762
Target:  5'- aCGAUGcGCGUCGAGAuccGCGCCGGaGACg -3'
miRNA:   3'- gGCUGC-CGCAGUUCU---UGUGGUUgUUG- -5'
25555 3' -50 NC_005337.1 + 95033 0.76 0.70762
Target:  5'- -gGACGGCGggCAGGAACGCCuGCGc- -3'
miRNA:   3'- ggCUGCCGCa-GUUCUUGUGGuUGUug -5'
25555 3' -50 NC_005337.1 + 54305 0.76 0.717996
Target:  5'- aCGcAgGGCGUgGuGGACACCAGCGGCg -3'
miRNA:   3'- gGC-UgCCGCAgUuCUUGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 10588 0.76 0.717996
Target:  5'- gCCGcACGGCGUCcguGGACACCAuGCGGa -3'
miRNA:   3'- -GGC-UGCCGCAGuu-CUUGUGGU-UGUUg -5'
25555 3' -50 NC_005337.1 + 51377 0.76 0.717996
Target:  5'- uUCGACGGCGUgAAGAAgAgCAuACAGCu -3'
miRNA:   3'- -GGCUGCCGCAgUUCUUgUgGU-UGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.