miRNA display CGI


Results 21 - 40 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25555 3' -50 NC_005337.1 + 67738 0.66 0.996087
Target:  5'- aCCGGCGGCGcggcgcgcagcUCcAGcgucucggccGGCugCAGCGGCu -3'
miRNA:   3'- -GGCUGCCGC-----------AGuUC----------UUGugGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 72363 0.66 0.996087
Target:  5'- -aGACGGaCGUCGAGAucggggACAUCGugGuGCa -3'
miRNA:   3'- ggCUGCC-GCAGUUCU------UGUGGUugU-UG- -5'
25555 3' -50 NC_005337.1 + 48363 0.66 0.996087
Target:  5'- gCCG-CGGUGguggaCGAGAACGUCAGCcGCg -3'
miRNA:   3'- -GGCuGCCGCa----GUUCUUGUGGUUGuUG- -5'
25555 3' -50 NC_005337.1 + 21086 0.66 0.996087
Target:  5'- cCCgGACGuCGUCGaugucguacGGGACGCCGGCcGCc -3'
miRNA:   3'- -GG-CUGCcGCAGU---------UCUUGUGGUUGuUG- -5'
25555 3' -50 NC_005337.1 + 82959 0.66 0.996087
Target:  5'- ---cUGGCGUagauGAGCACCAGCGGg -3'
miRNA:   3'- ggcuGCCGCAguu-CUUGUGGUUGUUg -5'
25555 3' -50 NC_005337.1 + 48041 0.66 0.996087
Target:  5'- gCGACGGUGcCc--AACGCCGugAGCc -3'
miRNA:   3'- gGCUGCCGCaGuucUUGUGGUugUUG- -5'
25555 3' -50 NC_005337.1 + 16360 0.66 0.996087
Target:  5'- gCCuuCGGCGcCcucGAGCACCAGCGc- -3'
miRNA:   3'- -GGcuGCCGCaGuu-CUUGUGGUUGUug -5'
25555 3' -50 NC_005337.1 + 32405 0.66 0.996087
Target:  5'- uUGACGGUG--AAGGugACCAGCGc- -3'
miRNA:   3'- gGCUGCCGCagUUCUugUGGUUGUug -5'
25555 3' -50 NC_005337.1 + 59846 0.66 0.996087
Target:  5'- uCCGGCGGUagcgGUCGAu-GCGCCggUAGa -3'
miRNA:   3'- -GGCUGCCG----CAGUUcuUGUGGuuGUUg -5'
25555 3' -50 NC_005337.1 + 99681 0.66 0.996087
Target:  5'- gCGGCcugGGCGUgGuGGAC-CCGGCGACc -3'
miRNA:   3'- gGCUG---CCGCAgUuCUUGuGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 5633 0.66 0.996087
Target:  5'- aCCGGCcGCG-CAGGAuauCCAGCAGg -3'
miRNA:   3'- -GGCUGcCGCaGUUCUuguGGUUGUUg -5'
25555 3' -50 NC_005337.1 + 41829 0.66 0.996024
Target:  5'- aCCGGCGGUGgUCGAaggagauGAGCACguGCucgAGCa -3'
miRNA:   3'- -GGCUGCCGC-AGUU-------CUUGUGguUG---UUG- -5'
25555 3' -50 NC_005337.1 + 22923 0.66 0.995488
Target:  5'- gCGACaGCGUCcuccgcuacuuccuGGACGCCAGCugGGCa -3'
miRNA:   3'- gGCUGcCGCAGuu------------CUUGUGGUUG--UUG- -5'
25555 3' -50 NC_005337.1 + 49677 0.66 0.995417
Target:  5'- aCC-ACGGCGUCGcucguGGucacccACACCAGCGc- -3'
miRNA:   3'- -GGcUGCCGCAGU-----UCu-----UGUGGUUGUug -5'
25555 3' -50 NC_005337.1 + 60067 0.66 0.995417
Target:  5'- gCCGcaagcACGGCGgagaaCAcGAACGCCGACu-- -3'
miRNA:   3'- -GGC-----UGCCGCa----GUuCUUGUGGUUGuug -5'
25555 3' -50 NC_005337.1 + 44740 0.66 0.995417
Target:  5'- gCUGACGGgGUacu--ACGCCAACAu- -3'
miRNA:   3'- -GGCUGCCgCAguucuUGUGGUUGUug -5'
25555 3' -50 NC_005337.1 + 49834 0.66 0.995417
Target:  5'- aCGAgCaGCuGUCGcacgcgaaccGGGACGCCGGCGGCa -3'
miRNA:   3'- gGCU-GcCG-CAGU----------UCUUGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 91454 0.66 0.995417
Target:  5'- aCCuGCGGCGUCugggcGAGCACgAucccgugcuucGCGGCg -3'
miRNA:   3'- -GGcUGCCGCAGuu---CUUGUGgU-----------UGUUG- -5'
25555 3' -50 NC_005337.1 + 17683 0.66 0.995417
Target:  5'- aCCG-CGGCGUUGAuggcGGGCAUgGGCGAg -3'
miRNA:   3'- -GGCuGCCGCAGUU----CUUGUGgUUGUUg -5'
25555 3' -50 NC_005337.1 + 15248 0.66 0.995417
Target:  5'- cCUGGCGGCGcCG---GCGCCGaacguugugGCGACg -3'
miRNA:   3'- -GGCUGCCGCaGUucuUGUGGU---------UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.