miRNA display CGI


Results 1 - 20 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25555 3' -50 NC_005337.1 + 43843 0.74 0.806549
Target:  5'- gCCGGCGGCGcggUgGAGAucguguACugCGACGGCg -3'
miRNA:   3'- -GGCUGCCGC---AgUUCU------UGugGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 3938 0.76 0.748603
Target:  5'- --aGCGGCGUC--GAGCugCAGCAGCg -3'
miRNA:   3'- ggcUGCCGCAGuuCUUGugGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 133729 0.75 0.758598
Target:  5'- gCGGCGGUGgcgGAGuGGCGCCGGCAGCu -3'
miRNA:   3'- gGCUGCCGCag-UUC-UUGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 47331 0.75 0.758598
Target:  5'- -aGGCGcGCGUgGucauGGACGCCGACGACa -3'
miRNA:   3'- ggCUGC-CGCAgUu---CUUGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 72156 0.75 0.768472
Target:  5'- aCGACGGCGUCGuGAACu---ACAACg -3'
miRNA:   3'- gGCUGCCGCAGUuCUUGugguUGUUG- -5'
25555 3' -50 NC_005337.1 + 125424 0.75 0.768472
Target:  5'- aCGGCGGCGUCAGGGucCGCgAacuggaguACAACg -3'
miRNA:   3'- gGCUGCCGCAGUUCUu-GUGgU--------UGUUG- -5'
25555 3' -50 NC_005337.1 + 35635 0.75 0.787814
Target:  5'- aUGACGaGCaUCAGGAgggucGCGCCGACGGCg -3'
miRNA:   3'- gGCUGC-CGcAGUUCU-----UGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 29148 0.75 0.797262
Target:  5'- gCGACGGcCGUCcGGAGCGCCGcgucgucCAGCu -3'
miRNA:   3'- gGCUGCC-GCAGuUCUUGUGGUu------GUUG- -5'
25555 3' -50 NC_005337.1 + 59177 0.75 0.797262
Target:  5'- cCCaGGcCGuGCGUC-GGGGCACCGGCGACg -3'
miRNA:   3'- -GG-CU-GC-CGCAGuUCUUGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 29588 0.76 0.738498
Target:  5'- cUCGGCGGUGUCcgacgcGGACGCCAugACGACc -3'
miRNA:   3'- -GGCUGCCGCAGuu----CUUGUGGU--UGUUG- -5'
25555 3' -50 NC_005337.1 + 41946 0.76 0.738498
Target:  5'- -gGACGGCcUCAGGAACACCcuGACAc- -3'
miRNA:   3'- ggCUGCCGcAGUUCUUGUGG--UUGUug -5'
25555 3' -50 NC_005337.1 + 10588 0.76 0.717996
Target:  5'- gCCGcACGGCGUCcguGGACACCAuGCGGa -3'
miRNA:   3'- -GGC-UGCCGCAGuu-CUUGUGGU-UGUUg -5'
25555 3' -50 NC_005337.1 + 112678 0.8 0.542836
Target:  5'- -gGACGGCGUUAAGGcggccuaccgcacagGCACCGGCAAg -3'
miRNA:   3'- ggCUGCCGCAGUUCU---------------UGUGGUUGUUg -5'
25555 3' -50 NC_005337.1 + 1314 0.79 0.549065
Target:  5'- uCCGGCGGCG-CAGGAGguCCAGCGc- -3'
miRNA:   3'- -GGCUGCCGCaGUUCUUguGGUUGUug -5'
25555 3' -50 NC_005337.1 + 51982 0.79 0.559495
Target:  5'- gCUGGCGGCGgc-GGGGCACCAcuACGACg -3'
miRNA:   3'- -GGCUGCCGCaguUCUUGUGGU--UGUUG- -5'
25555 3' -50 NC_005337.1 + 34004 0.78 0.622961
Target:  5'- uCCaGCGGCGUCAggaGGAGCACCcgcuCGGCg -3'
miRNA:   3'- -GGcUGCCGCAGU---UCUUGUGGuu--GUUG- -5'
25555 3' -50 NC_005337.1 + 92513 0.77 0.676118
Target:  5'- gCCGACGGCuacaUCAuagccgccgagcAGcAGCGCCAACAGCg -3'
miRNA:   3'- -GGCUGCCGc---AGU------------UC-UUGUGGUUGUUG- -5'
25555 3' -50 NC_005337.1 + 95033 0.76 0.70762
Target:  5'- -gGACGGCGggCAGGAACGCCuGCGc- -3'
miRNA:   3'- ggCUGCCGCa-GUUCUUGUGGuUGUug -5'
25555 3' -50 NC_005337.1 + 99183 0.76 0.70762
Target:  5'- aCGAUGcGCGUCGAGAuccGCGCCGGaGACg -3'
miRNA:   3'- gGCUGC-CGCAGUUCU---UGUGGUUgUUG- -5'
25555 3' -50 NC_005337.1 + 51377 0.76 0.717996
Target:  5'- uUCGACGGCGUgAAGAAgAgCAuACAGCu -3'
miRNA:   3'- -GGCUGCCGCAgUUCUUgUgGU-UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.