miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25555 5' -56.9 NC_005337.1 + 105974 0.66 0.873285
Target:  5'- gCGCGCGacgaGGAGGUCaCCGGCguggggUUCGUg -3'
miRNA:   3'- aGCGCGCa---CUUCCGGaGGCUG------AAGCA- -5'
25555 5' -56.9 NC_005337.1 + 45898 0.66 0.873285
Target:  5'- cUGCGCGUGGgcguGGGCgUCCccCUUUGg -3'
miRNA:   3'- aGCGCGCACU----UCCGgAGGcuGAAGCa -5'
25555 5' -56.9 NC_005337.1 + 16693 0.66 0.873285
Target:  5'- cUCGCGCacGgcGGCCUCCG-CUgcCGg -3'
miRNA:   3'- -AGCGCGcaCuuCCGGAGGCuGAa-GCa -5'
25555 5' -56.9 NC_005337.1 + 83668 0.66 0.865912
Target:  5'- cCGgGgGgaGggGGCUUCCGccGCUUCGg -3'
miRNA:   3'- aGCgCgCa-CuuCCGGAGGC--UGAAGCa -5'
25555 5' -56.9 NC_005337.1 + 46683 0.66 0.865912
Target:  5'- gUCGCccgaGCGgcgccgGGAGGUCggCGACUUCGa -3'
miRNA:   3'- -AGCG----CGCa-----CUUCCGGagGCUGAAGCa -5'
25555 5' -56.9 NC_005337.1 + 59356 0.66 0.865912
Target:  5'- gCGCGCGcGAAGGCCgCCaGCcgCGc -3'
miRNA:   3'- aGCGCGCaCUUCCGGaGGcUGaaGCa -5'
25555 5' -56.9 NC_005337.1 + 23063 0.66 0.858329
Target:  5'- cCGCGCGccgGAAcgcggcGGCCgugcCCGGCaUCGUg -3'
miRNA:   3'- aGCGCGCa--CUU------CCGGa---GGCUGaAGCA- -5'
25555 5' -56.9 NC_005337.1 + 60444 0.66 0.858329
Target:  5'- cUCGCGCaUGAccGCCUCCG-CgaCGUu -3'
miRNA:   3'- -AGCGCGcACUucCGGAGGCuGaaGCA- -5'
25555 5' -56.9 NC_005337.1 + 114740 0.66 0.850543
Target:  5'- gCGCGUGcUGGAcGGgCUCCGGCacUCGg -3'
miRNA:   3'- aGCGCGC-ACUU-CCgGAGGCUGa-AGCa -5'
25555 5' -56.9 NC_005337.1 + 56973 0.66 0.850543
Target:  5'- cCGacuGCGUGcAGGCCaUCGugUUCGg -3'
miRNA:   3'- aGCg--CGCACuUCCGGaGGCugAAGCa -5'
25555 5' -56.9 NC_005337.1 + 48330 0.66 0.850543
Target:  5'- aUGUGCGUGGAcugCUUCGACUUCGa -3'
miRNA:   3'- aGCGCGCACUUccgGAGGCUGAAGCa -5'
25555 5' -56.9 NC_005337.1 + 14563 0.66 0.850543
Target:  5'- cUCGUGCGauccGGCCUCgCGGCUcCGg -3'
miRNA:   3'- -AGCGCGCacuuCCGGAG-GCUGAaGCa -5'
25555 5' -56.9 NC_005337.1 + 10453 0.66 0.850543
Target:  5'- gCGCGuCGUGcgccAGGaCCUCCGugUcCGg -3'
miRNA:   3'- aGCGC-GCACu---UCC-GGAGGCugAaGCa -5'
25555 5' -56.9 NC_005337.1 + 88252 0.66 0.850543
Target:  5'- gUCGUGCGUGccGGCgCgCCGGCgggCGc -3'
miRNA:   3'- -AGCGCGCACuuCCG-GaGGCUGaa-GCa -5'
25555 5' -56.9 NC_005337.1 + 131610 0.66 0.849753
Target:  5'- cUCGCGCGcacucagcgUGGAGGCggccggcgccaccUUCCG-CUUCGa -3'
miRNA:   3'- -AGCGCGC---------ACUUCCG-------------GAGGCuGAAGCa -5'
25555 5' -56.9 NC_005337.1 + 32563 0.66 0.842559
Target:  5'- -aGgGCaGUGcGGGCCUCCGACa---- -3'
miRNA:   3'- agCgCG-CACuUCCGGAGGCUGaagca -5'
25555 5' -56.9 NC_005337.1 + 70163 0.66 0.842559
Target:  5'- gCGcCGCGUGAgccAGGCCgucgucaaCGACaUCGUc -3'
miRNA:   3'- aGC-GCGCACU---UCCGGag------GCUGaAGCA- -5'
25555 5' -56.9 NC_005337.1 + 133155 0.66 0.834385
Target:  5'- gCGCGCGUGcugcGGCUgcucCCGGCggCGg -3'
miRNA:   3'- aGCGCGCACuu--CCGGa---GGCUGaaGCa -5'
25555 5' -56.9 NC_005337.1 + 133155 0.66 0.834385
Target:  5'- gCGCGCGUGcugcGGCUgcucCCGGCggCGg -3'
miRNA:   3'- aGCGCGCACuu--CCGGa---GGCUGaaGCa -5'
25555 5' -56.9 NC_005337.1 + 50576 0.67 0.826028
Target:  5'- cCGCGCcUGAAGGCCUgucgcgacgcgCCGAag-CGg -3'
miRNA:   3'- aGCGCGcACUUCCGGA-----------GGCUgaaGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.