miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25555 5' -56.9 NC_005337.1 + 122313 0.67 0.820929
Target:  5'- gCGgGCGUGAacuacuacaaggucaAGGUCUCCGGCcgggacgacgUCGg -3'
miRNA:   3'- aGCgCGCACU---------------UCCGGAGGCUGa---------AGCa -5'
25555 5' -56.9 NC_005337.1 + 21764 0.67 0.817496
Target:  5'- gUCGCaGCGcUGcGAGGUCUUCGACgcCGUg -3'
miRNA:   3'- -AGCG-CGC-AC-UUCCGGAGGCUGaaGCA- -5'
25555 5' -56.9 NC_005337.1 + 9426 0.67 0.817496
Target:  5'- cUCGCGgGUGgcGGCCaUCUGcGCcUCGa -3'
miRNA:   3'- -AGCGCgCACuuCCGG-AGGC-UGaAGCa -5'
25555 5' -56.9 NC_005337.1 + 4109 0.67 0.817496
Target:  5'- cCGCGCGcac-GGCCUCCGAaagCGc -3'
miRNA:   3'- aGCGCGCacuuCCGGAGGCUgaaGCa -5'
25555 5' -56.9 NC_005337.1 + 81467 0.67 0.817496
Target:  5'- gUCGCGCagcagguccgccGUGguGGgCUCCGugUUCa- -3'
miRNA:   3'- -AGCGCG------------CACuuCCgGAGGCugAAGca -5'
25555 5' -56.9 NC_005337.1 + 22063 0.67 0.808795
Target:  5'- cCGCGCgGUGAAGcGCCUggCCGuACUgcgccugcUCGUg -3'
miRNA:   3'- aGCGCG-CACUUC-CGGA--GGC-UGA--------AGCA- -5'
25555 5' -56.9 NC_005337.1 + 61686 0.67 0.799936
Target:  5'- gCGCGCGacccGGAGGCgUCgGugUUCa- -3'
miRNA:   3'- aGCGCGCa---CUUCCGgAGgCugAAGca -5'
25555 5' -56.9 NC_005337.1 + 109606 0.67 0.790925
Target:  5'- cUCGCgGCG-GAAGGCCUCgGugUcCa- -3'
miRNA:   3'- -AGCG-CGCaCUUCCGGAGgCugAaGca -5'
25555 5' -56.9 NC_005337.1 + 129183 0.67 0.790925
Target:  5'- aCGCGCugaUGGAGGCCggUGcCUUCGUg -3'
miRNA:   3'- aGCGCGc--ACUUCCGGagGCuGAAGCA- -5'
25555 5' -56.9 NC_005337.1 + 69303 0.68 0.781772
Target:  5'- uUCGCGCGggaGAAGGCCUUC----UCGg -3'
miRNA:   3'- -AGCGCGCa--CUUCCGGAGGcugaAGCa -5'
25555 5' -56.9 NC_005337.1 + 59607 0.68 0.772485
Target:  5'- cUCGCGCGUcacgcaguccacGAAGGUCUCCccgGGCagCGg -3'
miRNA:   3'- -AGCGCGCA------------CUUCCGGAGG---CUGaaGCa -5'
25555 5' -56.9 NC_005337.1 + 94271 0.68 0.753546
Target:  5'- cCGCGCG-GAuGGCCUCCGuggcCUccugCGUc -3'
miRNA:   3'- aGCGCGCaCUuCCGGAGGCu---GAa---GCA- -5'
25555 5' -56.9 NC_005337.1 + 99978 0.68 0.752587
Target:  5'- -aGCGgcaugauCGUGgcGGCCUUCGACUUgGg -3'
miRNA:   3'- agCGC-------GCACuuCCGGAGGCUGAAgCa -5'
25555 5' -56.9 NC_005337.1 + 86239 0.68 0.743912
Target:  5'- cCGCGCGUcGuucGCCgCCGugUUCGUg -3'
miRNA:   3'- aGCGCGCA-CuucCGGaGGCugAAGCA- -5'
25555 5' -56.9 NC_005337.1 + 45500 0.68 0.743912
Target:  5'- aCGCaCGUcGAAGGCCUCC-ACgUCGg -3'
miRNA:   3'- aGCGcGCA-CUUCCGGAGGcUGaAGCa -5'
25555 5' -56.9 NC_005337.1 + 25323 0.68 0.738084
Target:  5'- -gGCGCGUGuacgaccccaacgacGAGGUCUUCGACgcgCGg -3'
miRNA:   3'- agCGCGCAC---------------UUCCGGAGGCUGaa-GCa -5'
25555 5' -56.9 NC_005337.1 + 73097 0.68 0.734181
Target:  5'- aCGCGCGUGugcaccaagGAGGaCUUCGACaccgUCGUg -3'
miRNA:   3'- aGCGCGCAC---------UUCCgGAGGCUGa---AGCA- -5'
25555 5' -56.9 NC_005337.1 + 59027 0.68 0.734181
Target:  5'- gUGCGCGc---GGCCUucaCCGACUUCGc -3'
miRNA:   3'- aGCGCGCacuuCCGGA---GGCUGAAGCa -5'
25555 5' -56.9 NC_005337.1 + 23907 0.68 0.733203
Target:  5'- aCGCcCGUGGGacGGCugccgccCUCCGACUUCGa -3'
miRNA:   3'- aGCGcGCACUU--CCG-------GAGGCUGAAGCa -5'
25555 5' -56.9 NC_005337.1 + 109474 0.69 0.724361
Target:  5'- gCGCGCGUGGGcGcGCUUCCGGaucUCGg -3'
miRNA:   3'- aGCGCGCACUU-C-CGGAGGCUga-AGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.