miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25555 5' -56.9 NC_005337.1 + 70163 0.66 0.842559
Target:  5'- gCGcCGCGUGAgccAGGCCgucgucaaCGACaUCGUc -3'
miRNA:   3'- aGC-GCGCACU---UCCGGag------GCUGaAGCA- -5'
25555 5' -56.9 NC_005337.1 + 109606 0.67 0.790925
Target:  5'- cUCGCgGCG-GAAGGCCUCgGugUcCa- -3'
miRNA:   3'- -AGCG-CGCaCUUCCGGAGgCugAaGca -5'
25555 5' -56.9 NC_005337.1 + 61686 0.67 0.799936
Target:  5'- gCGCGCGacccGGAGGCgUCgGugUUCa- -3'
miRNA:   3'- aGCGCGCa---CUUCCGgAGgCugAAGca -5'
25555 5' -56.9 NC_005337.1 + 22063 0.67 0.808795
Target:  5'- cCGCGCgGUGAAGcGCCUggCCGuACUgcgccugcUCGUg -3'
miRNA:   3'- aGCGCG-CACUUC-CGGA--GGC-UGA--------AGCA- -5'
25555 5' -56.9 NC_005337.1 + 21764 0.67 0.817496
Target:  5'- gUCGCaGCGcUGcGAGGUCUUCGACgcCGUg -3'
miRNA:   3'- -AGCG-CGC-AC-UUCCGGAGGCUGaaGCA- -5'
25555 5' -56.9 NC_005337.1 + 9426 0.67 0.817496
Target:  5'- cUCGCGgGUGgcGGCCaUCUGcGCcUCGa -3'
miRNA:   3'- -AGCGCgCACuuCCGG-AGGC-UGaAGCa -5'
25555 5' -56.9 NC_005337.1 + 50576 0.67 0.826028
Target:  5'- cCGCGCcUGAAGGCCUgucgcgacgcgCCGAag-CGg -3'
miRNA:   3'- aGCGCGcACUUCCGGA-----------GGCUgaaGCa -5'
25555 5' -56.9 NC_005337.1 + 133155 0.66 0.834385
Target:  5'- gCGCGCGUGcugcGGCUgcucCCGGCggCGg -3'
miRNA:   3'- aGCGCGCACuu--CCGGa---GGCUGaaGCa -5'
25555 5' -56.9 NC_005337.1 + 32563 0.66 0.842559
Target:  5'- -aGgGCaGUGcGGGCCUCCGACa---- -3'
miRNA:   3'- agCgCG-CACuUCCGGAGGCUGaagca -5'
25555 5' -56.9 NC_005337.1 + 129183 0.67 0.790925
Target:  5'- aCGCGCugaUGGAGGCCggUGcCUUCGUg -3'
miRNA:   3'- aGCGCGc--ACUUCCGGagGCuGAAGCA- -5'
25555 5' -56.9 NC_005337.1 + 69303 0.68 0.781772
Target:  5'- uUCGCGCGggaGAAGGCCUUC----UCGg -3'
miRNA:   3'- -AGCGCGCa--CUUCCGGAGGcugaAGCa -5'
25555 5' -56.9 NC_005337.1 + 99978 0.68 0.752587
Target:  5'- -aGCGgcaugauCGUGgcGGCCUUCGACUUgGg -3'
miRNA:   3'- agCGC-------GCACuuCCGGAGGCUGAAgCa -5'
25555 5' -56.9 NC_005337.1 + 99557 0.76 0.345918
Target:  5'- cUCGCGCGaGGAGGcCCUgCGGCUgcUCGUg -3'
miRNA:   3'- -AGCGCGCaCUUCC-GGAgGCUGA--AGCA- -5'
25555 5' -56.9 NC_005337.1 + 88760 0.75 0.393512
Target:  5'- cCGCGgcgccgacaccgaCGUGGAGGCCUUCGACgugCGUc -3'
miRNA:   3'- aGCGC-------------GCACUUCCGGAGGCUGaa-GCA- -5'
25555 5' -56.9 NC_005337.1 + 64739 0.71 0.576523
Target:  5'- cCGCGCGccgGuucccugcgaucgacGAGGCCUCCGGCgaggCGUu -3'
miRNA:   3'- aGCGCGCa--C---------------UUCCGGAGGCUGaa--GCA- -5'
25555 5' -56.9 NC_005337.1 + 76126 0.71 0.61309
Target:  5'- cUUGCGCGcGAAGGCCgCCGAUccguccacgUCGUc -3'
miRNA:   3'- -AGCGCGCaCUUCCGGaGGCUGa--------AGCA- -5'
25555 5' -56.9 NC_005337.1 + 99351 0.7 0.623295
Target:  5'- aUGCGCGUGAAGGgCaUCGACUUg-- -3'
miRNA:   3'- aGCGCGCACUUCCgGaGGCUGAAgca -5'
25555 5' -56.9 NC_005337.1 + 35310 0.69 0.67426
Target:  5'- aUCGCGCGgcaaucGAacuuuuucgGGGCCUgggCCGugUUCGg -3'
miRNA:   3'- -AGCGCGCa-----CU---------UCCGGA---GGCugAAGCa -5'
25555 5' -56.9 NC_005337.1 + 66017 0.69 0.723375
Target:  5'- -aGCGCGUGuGGGCCaugcacgUCCu-CUUCGUg -3'
miRNA:   3'- agCGCGCACuUCCGG-------AGGcuGAAGCA- -5'
25555 5' -56.9 NC_005337.1 + 23907 0.68 0.733203
Target:  5'- aCGCcCGUGGGacGGCugccgccCUCCGACUUCGa -3'
miRNA:   3'- aGCGcGCACUU--CCG-------GAGGCUGAAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.