miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25556 5' -57.8 NC_005337.1 + 55769 0.66 0.815669
Target:  5'- uCGUG-GCGGCGUacu--CCCUGUUCc -3'
miRNA:   3'- uGCACuCGCCGCAcuacuGGGACGAG- -5'
25556 5' -57.8 NC_005337.1 + 49367 0.66 0.797953
Target:  5'- cGCGUGcGGCGGCuacUGuucGACCUcgUGCUCa -3'
miRNA:   3'- -UGCAC-UCGCCGc--ACua-CUGGG--ACGAG- -5'
25556 5' -57.8 NC_005337.1 + 104806 0.66 0.788865
Target:  5'- cGCGUucccGCGGC-UGGUG-CUCUGCUCu -3'
miRNA:   3'- -UGCAcu--CGCCGcACUACuGGGACGAG- -5'
25556 5' -57.8 NC_005337.1 + 95830 0.66 0.779635
Target:  5'- gGCGUacGCcucgGGCGUGAUGAcgcgcCCCUGgUCg -3'
miRNA:   3'- -UGCAcuCG----CCGCACUACU-----GGGACgAG- -5'
25556 5' -57.8 NC_005337.1 + 74899 0.66 0.779635
Target:  5'- gACGccGGgGGCGUGAUGGCgCgGCUg -3'
miRNA:   3'- -UGCacUCgCCGCACUACUGgGaCGAg -5'
25556 5' -57.8 NC_005337.1 + 30232 0.67 0.760786
Target:  5'- aGCGUGcGCGaggagacguuccGCGcGAUGgcgucGCCCUGCUCc -3'
miRNA:   3'- -UGCACuCGC------------CGCaCUAC-----UGGGACGAG- -5'
25556 5' -57.8 NC_005337.1 + 122663 0.67 0.760786
Target:  5'- uCGUcGAGCaGGUGgcccgccgGGUGugcCCCUGCUCg -3'
miRNA:   3'- uGCA-CUCG-CCGCa-------CUACu--GGGACGAG- -5'
25556 5' -57.8 NC_005337.1 + 4041 0.67 0.741477
Target:  5'- cGCGUGcAGCGGCGUcuugucGAgcgGGCCCgUGUa- -3'
miRNA:   3'- -UGCAC-UCGCCGCA------CUa--CUGGG-ACGag -5'
25556 5' -57.8 NC_005337.1 + 25351 0.67 0.731675
Target:  5'- cACGUc-GCGGCGcgucucgcUGGUGcCCUUGCUCa -3'
miRNA:   3'- -UGCAcuCGCCGC--------ACUACuGGGACGAG- -5'
25556 5' -57.8 NC_005337.1 + 116741 0.67 0.711819
Target:  5'- gACGUGgugaAGCGGC-UGAUGAaggacaCCUGCg- -3'
miRNA:   3'- -UGCAC----UCGCCGcACUACUg-----GGACGag -5'
25556 5' -57.8 NC_005337.1 + 105166 0.67 0.711819
Target:  5'- gGCGcUGcaCGGCGUGGUcGAcCCCUGCUUc -3'
miRNA:   3'- -UGC-ACucGCCGCACUA-CU-GGGACGAG- -5'
25556 5' -57.8 NC_005337.1 + 12888 0.68 0.69169
Target:  5'- gACGUgGAGCGGCGUGcacuuguacGUGcCCUUGUa- -3'
miRNA:   3'- -UGCA-CUCGCCGCAC---------UACuGGGACGag -5'
25556 5' -57.8 NC_005337.1 + 80272 0.69 0.650905
Target:  5'- cGCGUGcGCGaCGcGGUGAUCCgGCUCa -3'
miRNA:   3'- -UGCACuCGCcGCaCUACUGGGaCGAG- -5'
25556 5' -57.8 NC_005337.1 + 9026 0.69 0.630388
Target:  5'- uACGUGcAGUGGCGUGuacccguacgGACCCgugaaGUUCa -3'
miRNA:   3'- -UGCAC-UCGCCGCACua--------CUGGGa----CGAG- -5'
25556 5' -57.8 NC_005337.1 + 35147 0.69 0.609876
Target:  5'- cAUGaUGAGCGGCGcGAcGAgCCgGCUCg -3'
miRNA:   3'- -UGC-ACUCGCCGCaCUaCUgGGaCGAG- -5'
25556 5' -57.8 NC_005337.1 + 44127 0.69 0.609876
Target:  5'- gGCGUcGAguccguGCGGCG-GAUGACgCUGUUCc -3'
miRNA:   3'- -UGCA-CU------CGCCGCaCUACUGgGACGAG- -5'
25556 5' -57.8 NC_005337.1 + 12780 0.7 0.579251
Target:  5'- cAUGUGcAGCGGCGUGAacccgcagaUGuCCCgGCUg -3'
miRNA:   3'- -UGCAC-UCGCCGCACU---------ACuGGGaCGAg -5'
25556 5' -57.8 NC_005337.1 + 91075 0.72 0.461748
Target:  5'- cGCGaaGGaCGGCGcGGUGACCgUGCUCg -3'
miRNA:   3'- -UGCacUC-GCCGCaCUACUGGgACGAG- -5'
25556 5' -57.8 NC_005337.1 + 83909 0.73 0.39075
Target:  5'- uACGgGGGCGGCGccUGcUGGCCCagGCUCg -3'
miRNA:   3'- -UGCaCUCGCCGC--ACuACUGGGa-CGAG- -5'
25556 5' -57.8 NC_005337.1 + 36137 0.74 0.350149
Target:  5'- uCGUGcGCGGCGUGcgGGUCCaUGCUCa -3'
miRNA:   3'- uGCACuCGCCGCACuaCUGGG-ACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.