miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25557 3' -63.6 NC_005337.1 + 44328 0.66 0.578002
Target:  5'- uGCGGcCGCGCCuuuauccgcgcGGCccUCUgUGAGGAGu -3'
miRNA:   3'- gCGUCaGCGCGG-----------CCG--AGGgGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 93951 0.66 0.578002
Target:  5'- aCGUguUCGCGUUcucGCUgucCCCCGAGGAGa -3'
miRNA:   3'- -GCGucAGCGCGGc--CGA---GGGGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 68507 0.66 0.578002
Target:  5'- gCGCGGacaGCGCCGGCgUCaggaacaCCGAgucGGAGc -3'
miRNA:   3'- -GCGUCag-CGCGGCCG-AGg------GGCU---CCUC- -5'
25557 3' -63.6 NC_005337.1 + 104199 0.66 0.568361
Target:  5'- gCGCGa--GCGCCGcGCcaUCCUCGGGGAc -3'
miRNA:   3'- -GCGUcagCGCGGC-CG--AGGGGCUCCUc -5'
25557 3' -63.6 NC_005337.1 + 61872 0.66 0.568361
Target:  5'- uGCAcacGUCGCGCCa---CCCCGGGGGc -3'
miRNA:   3'- gCGU---CAGCGCGGccgaGGGGCUCCUc -5'
25557 3' -63.6 NC_005337.1 + 78289 0.66 0.568361
Target:  5'- aGUAGUUgGCGCCGuaCUCCaggCUGGGGAGg -3'
miRNA:   3'- gCGUCAG-CGCGGCc-GAGG---GGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 98015 0.66 0.568361
Target:  5'- gGCuGGUCGCGCUGGC-CaCCGAcGGGc -3'
miRNA:   3'- gCG-UCAGCGCGGCCGaGgGGCU-CCUc -5'
25557 3' -63.6 NC_005337.1 + 18727 0.66 0.568361
Target:  5'- uGCGG-CGCGCUGGCgCCuCUGAccGGAa -3'
miRNA:   3'- gCGUCaGCGCGGCCGaGG-GGCU--CCUc -5'
25557 3' -63.6 NC_005337.1 + 38899 0.66 0.567399
Target:  5'- uGCGGUCGCuggGCuucgucggcacgaCGGCUCCCCGGu--- -3'
miRNA:   3'- gCGUCAGCG---CG-------------GCCGAGGGGCUccuc -5'
25557 3' -63.6 NC_005337.1 + 75087 0.66 0.567399
Target:  5'- -cCAGcCGuCGCCGGUgCCCCGAcgcacggccugggGGAGg -3'
miRNA:   3'- gcGUCaGC-GCGGCCGaGGGGCU-------------CCUC- -5'
25557 3' -63.6 NC_005337.1 + 18650 0.66 0.558761
Target:  5'- gGCGGcCGCGCCgccgccggcgGGCggaUCCGAGGGc -3'
miRNA:   3'- gCGUCaGCGCGG----------CCGag-GGGCUCCUc -5'
25557 3' -63.6 NC_005337.1 + 74591 0.66 0.549207
Target:  5'- gCGCuGUCGCGCauCGGCgCCUCccGGAGc -3'
miRNA:   3'- -GCGuCAGCGCG--GCCGaGGGGcuCCUC- -5'
25557 3' -63.6 NC_005337.1 + 118233 0.66 0.549207
Target:  5'- uGCAGU-GCG-CGGag-CCCGAGGAGa -3'
miRNA:   3'- gCGUCAgCGCgGCCgagGGGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 55352 0.66 0.549207
Target:  5'- aGCg--CGUGCgCGcGCUCUUCGAGGAGc -3'
miRNA:   3'- gCGucaGCGCG-GC-CGAGGGGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 115635 0.66 0.539705
Target:  5'- gGCGG-CGCgGCCGccaUCgCCGAGGAGu -3'
miRNA:   3'- gCGUCaGCG-CGGCcg-AGgGGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 70004 0.66 0.539705
Target:  5'- aGCAGUUGCuCCGGCgCgCCCGGGucccaGAGc -3'
miRNA:   3'- gCGUCAGCGcGGCCGaG-GGGCUC-----CUC- -5'
25557 3' -63.6 NC_005337.1 + 64658 0.66 0.539705
Target:  5'- uCGCcGUgGCGgugCGGCUCgUCGAGGGGc -3'
miRNA:   3'- -GCGuCAgCGCg--GCCGAGgGGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 66540 0.66 0.530258
Target:  5'- aGCuG-CGCGCCGcGCcgccggUCCCgGAGGAc -3'
miRNA:   3'- gCGuCaGCGCGGC-CG------AGGGgCUCCUc -5'
25557 3' -63.6 NC_005337.1 + 81462 0.66 0.530258
Target:  5'- gCGUAGUCGCGCagcaGG-UCCgCCGuGGuGg -3'
miRNA:   3'- -GCGUCAGCGCGg---CCgAGG-GGCuCCuC- -5'
25557 3' -63.6 NC_005337.1 + 29673 0.66 0.530258
Target:  5'- cCGCGGUgGCGCCGuauGCUCgCCGccGAc -3'
miRNA:   3'- -GCGUCAgCGCGGC---CGAGgGGCucCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.