miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25557 3' -63.6 NC_005337.1 + 133738 0.67 0.478609
Target:  5'- gCGgAGUgGCGCCGGCagcuggagcgccugCgCCgCGAGGAGc -3'
miRNA:   3'- -GCgUCAgCGCGGCCGa-------------G-GG-GCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 87747 0.69 0.406164
Target:  5'- uGgAGUCGC-UgGGCUCCUCGaAGGAGc -3'
miRNA:   3'- gCgUCAGCGcGgCCGAGGGGC-UCCUC- -5'
25557 3' -63.6 NC_005337.1 + 46051 0.68 0.414426
Target:  5'- uCGCAG-CaGC-CCGcCUCCUCGAGGAGg -3'
miRNA:   3'- -GCGUCaG-CGcGGCcGAGGGGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 99532 0.68 0.422791
Target:  5'- aCGCGGcccggUGCGCCGccgacuGCUCgCgCGAGGAGg -3'
miRNA:   3'- -GCGUCa----GCGCGGC------CGAGgG-GCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 80440 0.68 0.431257
Target:  5'- gCGCAG-CGCcaGCCGGU---CCGAGGAGa -3'
miRNA:   3'- -GCGUCaGCG--CGGCCGaggGGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 76994 0.68 0.431257
Target:  5'- cCGCAGccgcgCGCGCCGGC-CCCgCGcGGc- -3'
miRNA:   3'- -GCGUCa----GCGCGGCCGaGGG-GCuCCuc -5'
25557 3' -63.6 NC_005337.1 + 28504 0.68 0.448482
Target:  5'- gCGCGGUCGCG-CGGCaCUgCGuGGGGc -3'
miRNA:   3'- -GCGUCAGCGCgGCCGaGGgGCuCCUC- -5'
25557 3' -63.6 NC_005337.1 + 119666 0.68 0.457235
Target:  5'- cCGCAGUCaccggagacCGaCCuguacaagggaaGGCUUCCCGGGGAGa -3'
miRNA:   3'- -GCGUCAGc--------GC-GG------------CCGAGGGGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 68831 0.68 0.457235
Target:  5'- aCGCcGUCGCGCCcuGGCUCCuCCGc-GAc -3'
miRNA:   3'- -GCGuCAGCGCGG--CCGAGG-GGCucCUc -5'
25557 3' -63.6 NC_005337.1 + 35651 0.69 0.398005
Target:  5'- --gGGUCGCGCCgacGGCggUCCCGAGGu- -3'
miRNA:   3'- gcgUCAGCGCGG---CCGa-GGGGCUCCuc -5'
25557 3' -63.6 NC_005337.1 + 83334 0.69 0.389953
Target:  5'- gCGCGG-CGCGa-GGCgCCCCG-GGAGg -3'
miRNA:   3'- -GCGUCaGCGCggCCGaGGGGCuCCUC- -5'
25557 3' -63.6 NC_005337.1 + 14399 0.69 0.366444
Target:  5'- aGCAGUC-CGCCGGCgcugaaccgCgCCGccAGGAGa -3'
miRNA:   3'- gCGUCAGcGCGGCCGa--------GgGGC--UCCUC- -5'
25557 3' -63.6 NC_005337.1 + 90940 0.73 0.224775
Target:  5'- gGCGGccagCGCGUCGGCgagCCCCGAGcAGu -3'
miRNA:   3'- gCGUCa---GCGCGGCCGa--GGGGCUCcUC- -5'
25557 3' -63.6 NC_005337.1 + 64733 0.73 0.230064
Target:  5'- aGCAGcccgCGCGCCGGUUCCCugcgaucgaCGAGGc- -3'
miRNA:   3'- gCGUCa---GCGCGGCCGAGGG---------GCUCCuc -5'
25557 3' -63.6 NC_005337.1 + 46462 0.73 0.230064
Target:  5'- gCGCGG-CGCGCCGGCgagCuCCCGGGcAGc -3'
miRNA:   3'- -GCGUCaGCGCGGCCGa--G-GGGCUCcUC- -5'
25557 3' -63.6 NC_005337.1 + 1129 0.72 0.258096
Target:  5'- cCGCAGcacgcgCGCGaCCaGCUCCgCGGGGAGc -3'
miRNA:   3'- -GCGUCa-----GCGC-GGcCGAGGgGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 68289 0.7 0.320335
Target:  5'- uGCGGcCG-GCCGGCggcguggacgcgcgUgCCCGAGGAGg -3'
miRNA:   3'- gCGUCaGCgCGGCCG--------------AgGGGCUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 42370 0.7 0.351323
Target:  5'- aCGCAcGUCGUGaCCGGCgaCCCgGAGGc- -3'
miRNA:   3'- -GCGU-CAGCGC-GGCCGa-GGGgCUCCuc -5'
25557 3' -63.6 NC_005337.1 + 53668 0.7 0.351323
Target:  5'- uGCAG-CGCGUCGGCggCCgCaAGGAGg -3'
miRNA:   3'- gCGUCaGCGCGGCCGa-GGgGcUCCUC- -5'
25557 3' -63.6 NC_005337.1 + 82180 0.69 0.365678
Target:  5'- -cCGGUCGCGCCgaGGCuggaggaUCCgCUGGGGAGg -3'
miRNA:   3'- gcGUCAGCGCGG--CCG-------AGG-GGCUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.