miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25557 5' -54.5 NC_005337.1 + 74997 0.66 0.937204
Target:  5'- -aCCACgUAC-ACGAGgCGGcCGCCGCu -3'
miRNA:   3'- aaGGUG-AUGcUGCUCaGCCuGUGGUG- -5'
25557 5' -54.5 NC_005337.1 + 846 0.66 0.937204
Target:  5'- cUCgACgaagGCGGCGGGcagcgCGGGCGCgGCc -3'
miRNA:   3'- aAGgUGa---UGCUGCUCa----GCCUGUGgUG- -5'
25557 5' -54.5 NC_005337.1 + 47474 0.66 0.937204
Target:  5'- gUCCugcguCUACGACGAGgaggUGGACcggaGCuCGCu -3'
miRNA:   3'- aAGGu----GAUGCUGCUCa---GCCUG----UG-GUG- -5'
25557 5' -54.5 NC_005337.1 + 846 0.66 0.937204
Target:  5'- cUCgACgaagGCGGCGGGcagcgCGGGCGCgGCc -3'
miRNA:   3'- aAGgUGa---UGCUGCUCa----GCCUGUGgUG- -5'
25557 5' -54.5 NC_005337.1 + 12174 0.66 0.937204
Target:  5'- gUCCGCgccgugcGCGACGAgcugGUCGaGCACCGa -3'
miRNA:   3'- aAGGUGa------UGCUGCU----CAGCcUGUGGUg -5'
25557 5' -54.5 NC_005337.1 + 111684 0.66 0.932655
Target:  5'- gUCCACggcgGCGACGAccCGGAagaggucgucccugaACCGCg -3'
miRNA:   3'- aAGGUGa---UGCUGCUcaGCCUg--------------UGGUG- -5'
25557 5' -54.5 NC_005337.1 + 49747 0.66 0.932137
Target:  5'- -gCCGCcGCGuccuCGGGgaccUCGGAgGCCACg -3'
miRNA:   3'- aaGGUGaUGCu---GCUC----AGCCUgUGGUG- -5'
25557 5' -54.5 NC_005337.1 + 37177 0.66 0.932137
Target:  5'- -gCCACUGCGGCaccagcaugcGGUUGGGCACgCAg -3'
miRNA:   3'- aaGGUGAUGCUGc---------UCAGCCUGUG-GUg -5'
25557 5' -54.5 NC_005337.1 + 83131 0.66 0.932137
Target:  5'- -cCUugUACGACGAguucgccugcucGUCGGuGCGCuCGCg -3'
miRNA:   3'- aaGGugAUGCUGCU------------CAGCC-UGUG-GUG- -5'
25557 5' -54.5 NC_005337.1 + 131878 0.66 0.932137
Target:  5'- gUCCGCUGCcuccugGAGgCGGGCGCgCACg -3'
miRNA:   3'- aAGGUGAUGcug---CUCaGCCUGUG-GUG- -5'
25557 5' -54.5 NC_005337.1 + 74619 0.66 0.932137
Target:  5'- -gCCGCgACGACGugauGUUccccggcgGGGCGCCGCu -3'
miRNA:   3'- aaGGUGaUGCUGCu---CAG--------CCUGUGGUG- -5'
25557 5' -54.5 NC_005337.1 + 130666 0.66 0.932137
Target:  5'- -gCC-CUGCGaccGCGAGUgggCGGACuGCCGCu -3'
miRNA:   3'- aaGGuGAUGC---UGCUCA---GCCUG-UGGUG- -5'
25557 5' -54.5 NC_005337.1 + 48545 0.66 0.92682
Target:  5'- gUCCGCguccGCGACG-G-CGGACugCGa -3'
miRNA:   3'- aAGGUGa---UGCUGCuCaGCCUGugGUg -5'
25557 5' -54.5 NC_005337.1 + 30066 0.66 0.92682
Target:  5'- aUUCAC-AC-ACGAGUCGGGCGCagguGCa -3'
miRNA:   3'- aAGGUGaUGcUGCUCAGCCUGUGg---UG- -5'
25557 5' -54.5 NC_005337.1 + 1243 0.66 0.92682
Target:  5'- -cCCGuacACGACGAGcCGGGCgaucaGCCGCa -3'
miRNA:   3'- aaGGUga-UGCUGCUCaGCCUG-----UGGUG- -5'
25557 5' -54.5 NC_005337.1 + 42840 0.66 0.92682
Target:  5'- -cCCGCUgcGCGugGuGGUgaCGGACGCCuGCg -3'
miRNA:   3'- aaGGUGA--UGCugC-UCA--GCCUGUGG-UG- -5'
25557 5' -54.5 NC_005337.1 + 13760 0.66 0.92682
Target:  5'- cUCCGCgcgcccgaacGCGGCGAG--GGGCGCCAg -3'
miRNA:   3'- aAGGUGa---------UGCUGCUCagCCUGUGGUg -5'
25557 5' -54.5 NC_005337.1 + 62149 0.66 0.92682
Target:  5'- -gUCGCggaucACGAUGGGgaugCGGACGCCGu -3'
miRNA:   3'- aaGGUGa----UGCUGCUCa---GCCUGUGGUg -5'
25557 5' -54.5 NC_005337.1 + 81931 0.66 0.92682
Target:  5'- cUCCAUUuaaGCGACGGGUUuGugAuCCGCg -3'
miRNA:   3'- aAGGUGA---UGCUGCUCAGcCugU-GGUG- -5'
25557 5' -54.5 NC_005337.1 + 131617 0.66 0.921253
Target:  5'- --gCACUcaGCGugGAGgCGGccgGCGCCACc -3'
miRNA:   3'- aagGUGA--UGCugCUCaGCC---UGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.