miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25558 3' -54 NC_005337.1 + 130391 0.66 0.967281
Target:  5'- aCCUGCGCGUccucaagacgcucauGcgCGGCcGGUgccagaCCAUCGa -3'
miRNA:   3'- -GGACGCGCA---------------CuaGCUGcUCA------GGUAGC- -5'
25558 3' -54 NC_005337.1 + 81640 0.66 0.966015
Target:  5'- gCUUGCGCcc-GUCGACGAGgaUCCAcuUCa -3'
miRNA:   3'- -GGACGCGcacUAGCUGCUC--AGGU--AGc -5'
25558 3' -54 NC_005337.1 + 57955 0.66 0.966015
Target:  5'- cUCUGCGCGgGAUaCGAgccCGAGUCgGUg- -3'
miRNA:   3'- -GGACGCGCaCUA-GCU---GCUCAGgUAgc -5'
25558 3' -54 NC_005337.1 + 11613 0.66 0.966015
Target:  5'- cCCgGCGgGccaccUGcUCGACGAGUCgCGUCu -3'
miRNA:   3'- -GGaCGCgC-----ACuAGCUGCUCAG-GUAGc -5'
25558 3' -54 NC_005337.1 + 36132 0.66 0.962699
Target:  5'- cCCUGU-CGUGcgCGGCGugcgGGUCCAUg- -3'
miRNA:   3'- -GGACGcGCACuaGCUGC----UCAGGUAgc -5'
25558 3' -54 NC_005337.1 + 80267 0.66 0.962699
Target:  5'- aCgUGCGCGUGcgCGACGcGGugaUCCGgcUCa -3'
miRNA:   3'- -GgACGCGCACuaGCUGC-UC---AGGU--AGc -5'
25558 3' -54 NC_005337.1 + 7128 0.66 0.962699
Target:  5'- gCCcGCGCG-GAUCagcacgcgGACGAuGUCCGccUCGg -3'
miRNA:   3'- -GGaCGCGCaCUAG--------CUGCU-CAGGU--AGC- -5'
25558 3' -54 NC_005337.1 + 11829 0.66 0.959164
Target:  5'- aCUGCGCGaUGAagUCGGCGugcauGUgCCGcaUCGg -3'
miRNA:   3'- gGACGCGC-ACU--AGCUGCu----CA-GGU--AGC- -5'
25558 3' -54 NC_005337.1 + 44912 0.66 0.955405
Target:  5'- gCUGCGgGaGAUCGugGAcacguGUCCGcgCGg -3'
miRNA:   3'- gGACGCgCaCUAGCugCU-----CAGGUa-GC- -5'
25558 3' -54 NC_005337.1 + 66112 0.66 0.955405
Target:  5'- gUCUGCGCGcg--CGugGAGUUCAa-- -3'
miRNA:   3'- -GGACGCGCacuaGCugCUCAGGUagc -5'
25558 3' -54 NC_005337.1 + 72200 0.66 0.951418
Target:  5'- uCCgUGUuCGUGGUCGACGAGgcgcacaaCAUCu -3'
miRNA:   3'- -GG-ACGcGCACUAGCUGCUCag------GUAGc -5'
25558 3' -54 NC_005337.1 + 12175 0.67 0.9472
Target:  5'- uCC-GCGcCGUGcgCGACGAGcUgGUCGa -3'
miRNA:   3'- -GGaCGC-GCACuaGCUGCUCaGgUAGC- -5'
25558 3' -54 NC_005337.1 + 100027 0.67 0.944556
Target:  5'- aCCUGUGCGcGcgcauuuccgagaucGUCGACGAGaUgGUCGa -3'
miRNA:   3'- -GGACGCGCaC---------------UAGCUGCUCaGgUAGC- -5'
25558 3' -54 NC_005337.1 + 29354 0.67 0.942747
Target:  5'- uCCaUGCGCGUGAgcacCGGCGAGaggcUCagcuUCGa -3'
miRNA:   3'- -GG-ACGCGCACUa---GCUGCUC----AGgu--AGC- -5'
25558 3' -54 NC_005337.1 + 16092 0.67 0.942747
Target:  5'- aCCgGCGCGaGcUCGaACGGGUCCGccgCGg -3'
miRNA:   3'- -GGaCGCGCaCuAGC-UGCUCAGGUa--GC- -5'
25558 3' -54 NC_005337.1 + 22473 0.67 0.942747
Target:  5'- uCCUGgGCGUGGUggacuccgcCGACGAGgaguggcgCCAguacuUCGu -3'
miRNA:   3'- -GGACgCGCACUA---------GCUGCUCa-------GGU-----AGC- -5'
25558 3' -54 NC_005337.1 + 100980 0.67 0.938536
Target:  5'- gCUGCGCGUGGacauccugcaccacUCGAUcuccacgcgcgggaaGAGcUCCAUCc -3'
miRNA:   3'- gGACGCGCACU--------------AGCUG---------------CUC-AGGUAGc -5'
25558 3' -54 NC_005337.1 + 95278 0.67 0.938056
Target:  5'- gCCgGUGgGUGGacaUGACGAGUCCGUa- -3'
miRNA:   3'- -GGaCGCgCACUa--GCUGCUCAGGUAgc -5'
25558 3' -54 NC_005337.1 + 11681 0.67 0.933126
Target:  5'- gCCgccCGCGUGGUCcagGugGAaGUCCGUUGc -3'
miRNA:   3'- -GGac-GCGCACUAG---CugCU-CAGGUAGC- -5'
25558 3' -54 NC_005337.1 + 77655 0.67 0.927956
Target:  5'- cCCgUGCGCGaGGUCucgcaGACGAuGUCCGUgGa -3'
miRNA:   3'- -GG-ACGCGCaCUAG-----CUGCU-CAGGUAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.